Gene detail

Detail information of GWHGAAZE025360

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011101810.1	2.5553E-171	PREDICTED: uridine kinase-like protein 5 isoform X1 [Sesamum indicum]
COG	NP_242141.1	7E-56	uridine kinase
Swissprot	tr\|Q9LTY6\|UKL5_ARATH	3E-158	Probable uracil phosphoribosyltransferase
trEMBL	tr\|A0A022RWE5\|A0A022RWE5_ERYGU	1E-167	Uridine kinase {ECO:0000256\|RuleBase:RU003825}
TAIR10	AT3G27440.1	1E-128	uridine kinase-like 5

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	60142338	60149912	-
GWHAAZE00000007	mRNA	60142338	60149912	-
GWHAAZE00000007	exon	60149801	60149912	-
GWHAAZE00000007	exon	60148994	60149085	-
GWHAAZE00000007	exon	60148784	60148853	-
GWHAAZE00000007	exon	60148538	60148653	-
GWHAAZE00000007	exon	60148269	60148365	-
GWHAAZE00000007	exon	60143160	60143341	-
GWHAAZE00000007	exon	60142694	60142888	-
GWHAAZE00000007	exon	60142519	60142602	-
GWHAAZE00000007	exon	60142338	60142433	-
GWHAAZE00000007	CDS	60149801	60149912	-
GWHAAZE00000007	CDS	60148994	60149085	-
GWHAAZE00000007	CDS	60148784	60148853	-
GWHAAZE00000007	CDS	60148538	60148653	-
GWHAAZE00000007	CDS	60148269	60148365	-
GWHAAZE00000007	CDS	60143160	60143341	-
GWHAAZE00000007	CDS	60142694	60142888	-
GWHAAZE00000007	CDS	60142519	60142602	-
GWHAAZE00000007	CDS	60142338	60142433	-

Transcript Sequence
>GWHTAAZE025394 ATGGTGGATCCTGGAATGGCGGAAGCATTGACCAATAGCATACAAAATCAGGTTTCGAGCAAATCGAATGGTGTATTAGCACCGGCACCTCTTAAGCAACCATTCATAATCGGTGTTGCTGGTGGAACAGCGTCTGGCAAAACAACCGTTTGTGATATGATTATTTCACAGCTCCATGATCAACGCGTTGTTCTTGTCAATCAAGATTCGTTCTATCATTCGCTGAATGATGAGCAAGTGAAAAAAGTCCACGAGTACAACTTTGATCATCCTGATGCTTTCAATACGGGGCTTTTACTCTCTTGCATGGAATCACTGAAACAAGGACATGCAATTTGTGTCCCAAATTATGATTTCAAGAGCCATAGTAGCACTGAACCAGGACGCATGGTTAACCCTTCTGACGTCATCATTTTGGAAGGCATTCTTGTTCTTCATGATCCTCGTGTCCGGGATCTCATGAACATGAAGATCTTTGTTGATACAGTGATTGTTTTTGTCAAGTGTTCTCCCTTTTGCAATATCCATCATTCCAAATTTATCAGCGCAGATTCAGATGTTCGATTAGCGAGGAGGATACAGCGCGACACCGTTGAGAGGGGAAGAAACATTCAAAATGTGCTAGATCAAGTTAGTATACTTCTTGCTTGCTTTCTTTCTAAAATTAACTACTCTAACTTTGTAAAGCCCAGTTTTGAGGAATTCATCCTCCCTACAAAGAAACATGCAGATATCATCATCCCTCGAGGAGCAGATAACGACGTCGCCATTGACTTGATAGTACAACACATCCGCACAAAACTTAAACAGCATGATTTGTGTAAAATATATCCAAATGTTAATGTTATATACTCAACATTTCAGATTCGTGGGATGCACACGCTTATACGAGATGTCAAAACGACAAAACATGACTTTGTTTTCTATTCAGATCGACTTATTCGCTTGGTTGTCGAGCATGGTTTAGGCCACCTTCCCTTTACTGAAAAACAAGTCATTACTCCAACAGGCAAGTTTACTAGTTGTTCATTTGTCTCACATTAA

Network for GWHGAAZE025360

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00485.19	PRK	36	164	2.90E-25
PF00485.19	PRK	180	256	5.80E-12
PF14681.7	UPRTase	285	341	7.60E-12

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00876	udk, UCK	Metabolic pathways	map01100
		Pyrimidine metabolism	map00240
		Drug metabolism - other enzymes	map00983

Gene Ontology

GO term	Ontology	Name
GO:0005524	molecular_function	ATP binding
GO:0016301	molecular_function	kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.086
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	2.496
	SRR3591711	White flower	0.293
	SRR3591712	Green floral bud	18.594
	SRR3591713	Yellow flower	0.016
SRP173429	SRR8316895	Juvenile bud stage	7.602
	SRR8316896	Juvenile bud stage	16.138
	SRR8316897	Juvenile bud stage	7.628
	SRR8316894	Third green stage	7.355
	SRR8316900	Third green stage	25.308
	SRR8316901	Third green stage	25.881
	SRR8316898	Complete white stage	0.367
	SRR8316899	Complete white stage	0.831
	SRR8316903	Complete white stage	0.636
	SRR8316902	Silver flowering stage	0.348
	SRR8316904	Silver flowering stage	0.255
	SRR8316905	Silver flowering stage	0.095
	SRR8316906	Gold flowering stage	0.198
	SRR8316907	Gold flowering stage	0.519
	SRR8316908	Gold flowering stage	0.043
SRP132670	SRR6706286	Control	9.178
	SRR6706287	Light intensity 50%	9.874
	SRR6706288	Light intensity 20%	9.445
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.827
	CNS0095593	Slightly white alabastrum(diploid) 2	6.949
	CNS0095594	Slightly white alabastrum(diploid) 3	8.441
	CNS0095595	Whole white alabastrum(diploid) 2	10.985
	CNS0095596	Whole white alabastrum(diploid) 3	16.053
	CNS0095597	Whole white alabastrum(diploid) 4	11.509
	CNS0095598	Silvery flower (diploied) 1	0.173
	CNS0095599	Silvery flower (diploied) 2	1.564
	CNS0095600	Silvery flower (diploied) 3	0.381
	CNS0095601	Golden flower (diploid) 1	0.629
	CNS0095602	Golden flower (diploid) 2	0.152
	CNS0095603	Golden flower (diploid) 3	0.235
	CNS0095604	Slightly white alabastrum(tetraploid) 1	22.065
	CNS0095605	Slightly white alabastrum(tetraploid) 2	13.713
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.632
	CNS0095607	Whole white alabastrum(tetraploid) 1	23.463
	CNS0095608	Whole white alabastrum(tetraploid) 2	28.088
	CNS0095609	Whole white alabastrum(tetraploid) 3	33.958
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.361
	CNS0095612	Silvery flower (tetraploid) 3	1.361
	CNS0095613	Golden flower (tetraploid) 1	0.231
	CNS0095614	Golden flower (tetraploid) 2	0.011
	CNS0095615	Golden flower (tetraploid) 3	0.473
CRA001975	CRR073297	Stem 1	5.473
	CRR073298	Stem 2	5.079
	CRR073299	Stem 3	3.769
	CRR073300	Leaf 1	5.206
	CRR073301	Leaf 2	7.044
	CRR073302	Leaf 3	6.393
	CRR073303	Juvenile bud 1	4.475
	CRR073304	Juvenile bud 2	2.311
	CRR073305	Juvenile bud 3	1.302
	CRR073306	Third green 1	0.381
	CRR073307	Third green 2	1.059
	CRR073308	Third green 3	0.191
	CRR073309	Second white 1	0.108
	CRR073310	Second white 2	0.191
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.123
	CRR073313	Silver flowering 2	0.652
	CRR073314	Silver flowering 3	0.050
	CRR073315	Gold flowering 1	0.411
	CRR073316	Gold flowering 2	0.003
	CRR073317	Gold flowering 3	0.146
	CRR073318	Tawny withering 1	1.117
	CRR073319	Tawny withering 2	1.051
	CRR073320	Tawny withering 3	1.034