Detail information of GWHGAAZE025361


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP16620.10unnamed protein product [Coffea canephora]
Swissprottr|Q8VZV7|PMT9_ARATH0Probable methyltransferase PMT9
trEMBLtr|A0A068V741|A0A068V741_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_135 {ECO:0000313|EMBL:CDP16620.1}
TAIR10AT5G14430.10S-adenosyl-L-methionine-dependent methyltransferases superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene6015374060158293-
GWHAAZE00000007mRNA6015374060158293-
GWHAAZE00000007exon6015824160158293-
GWHAAZE00000007exon6015776060158107-
GWHAAZE00000007exon6015729660157460-
GWHAAZE00000007exon6015672260156904-
GWHAAZE00000007exon6015602460156618-
GWHAAZE00000007exon6015523060155342-
GWHAAZE00000007exon6015488860155108-
GWHAAZE00000007exon6015374060154052-
GWHAAZE00000007five_prime_UTR6015824160158293-
GWHAAZE00000007five_prime_UTR6015801260158107-
GWHAAZE00000007CDS6015776060158011-
GWHAAZE00000007CDS6015729660157460-
GWHAAZE00000007CDS6015672260156904-
GWHAAZE00000007CDS6015602460156618-
GWHAAZE00000007CDS6015523060155342-
GWHAAZE00000007CDS6015488860155108-
GWHAAZE00000007CDS6015374060154052-
Transcript Sequence

Network for GWHGAAZE025361

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0271


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03141.17Methyltransf_29926041.20E-223
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0008168molecular_functionmethyltransferase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf44.240
SRR3591706second leaf23.901
SRR3591707mature leaf22.010
SRR3591708Shoot apex33.516
SRR3591709Stem35.432
SRR3591710White floral bud36.229
SRR3591711White flower32.227
SRR3591712Green floral bud49.724
SRR3591713Yellow flower15.217
SRP173429 SRR8316895Juvenile bud stage 24.284
SRR8316896Juvenile bud stage 35.460
SRR8316897Juvenile bud stage 13.334
SRR8316894Third green stage 15.868
SRR8316900Third green stage 49.483
SRR8316901Third green stage 48.817
SRR8316898Complete white stage 13.855
SRR8316899Complete white stage 73.872
SRR8316903Complete white stage 25.109
SRR8316902Silver flowering stage12.298
SRR8316904Silver flowering stage20.181
SRR8316905Silver flowering stage9.174
SRR8316906Gold flowering stage 26.224
SRR8316907Gold flowering stage 24.838
SRR8316908Gold flowering stage 27.404
SRP132670SRR6706286Control35.614
SRR6706287Light intensity 50%36.391
SRR6706288Light intensity 20%40.631
CNP0000432CNS0095592Slightly white alabastrum(diploid) 119.377
CNS0095593Slightly white alabastrum(diploid) 220.903
CNS0095594Slightly white alabastrum(diploid) 317.157
CNS0095595Whole white alabastrum(diploid) 221.229
CNS0095596Whole white alabastrum(diploid) 319.814
CNS0095597Whole white alabastrum(diploid) 420.427
CNS0095598Silvery flower (diploied) 125.162
CNS0095599Silvery flower (diploied) 220.916
CNS0095600Silvery flower (diploied) 329.809
CNS0095601Golden flower (diploid) 121.194
CNS0095602Golden flower (diploid) 231.145
CNS0095603Golden flower (diploid) 328.965
CNS0095604Slightly white alabastrum(tetraploid) 125.286
CNS0095605Slightly white alabastrum(tetraploid) 219.072
CNS0095606Slightly white alabastrum(tetraploid) 353.629
CNS0095607Whole white alabastrum(tetraploid) 117.548
CNS0095608Whole white alabastrum(tetraploid) 215.573
CNS0095609Whole white alabastrum(tetraploid) 341.515
CNS0095610Silvery flower (tetraploid) 129.698
CNS0095611Silvery flower (tetraploid) 233.041
CNS0095612Silvery flower (tetraploid) 321.064
CNS0095613Golden flower (tetraploid) 112.921
CNS0095614Golden flower (tetraploid) 223.409
CNS0095615Golden flower (tetraploid) 317.082
CRA001975CRR073297Stem 132.770
CRR073298Stem 233.181
CRR073299Stem 326.239
CRR073300Leaf 144.918
CRR073301Leaf 235.632
CRR073302Leaf 337.914
CRR073303Juvenile bud 134.274
CRR073304Juvenile bud 237.225
CRR073305Juvenile bud 334.136
CRR073306Third green 16.250
CRR073307Third green 25.819
CRR073308Third green 37.542
CRR073309Second white 15.607
CRR073310Second white 27.201
CRR073311Second white 34.446
CRR073312Silver flowering 12.796
CRR073313Silver flowering 23.468
CRR073314Silver flowering 33.097
CRR073315Gold flowering 113.111
CRR073316Gold flowering 225.194
CRR073317Gold flowering 314.426
CRR073318Tawny withering 126.541
CRR073319Tawny withering 223.952
CRR073320Tawny withering 326.761