Detail information of GWHGAAZE025367


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrKHG12489.11.115E-117Ras-related RABB1b -like protein [Gossypium arboreum]
COGYP_008431664.12E-25hypothetical protein N186_01315
Swissprottr|Q38922|RAB1B_ARATH2E-115Ras-related protein RABB1b
trEMBLtr|A0A068UM16|A0A068UM16_COFCA6E-118Coffea canephora DH200=94 genomic scaffold, scaffold_38 {ECO:0000313|EMBL:CDP09506.1}
TAIR10AT4G35860.12E-91GTP-binding 2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene6025770460263129-
GWHAAZE00000007mRNA6025770460263129-
GWHAAZE00000007exon6026311260263129-
GWHAAZE00000007exon6026210860262275-
GWHAAZE00000007exon6025847460258556-
GWHAAZE00000007exon6025787660258080-
GWHAAZE00000007exon6025770460257793-
GWHAAZE00000007CDS6026311260263129-
GWHAAZE00000007CDS6026210860262275-
GWHAAZE00000007CDS6025847460258556-
GWHAAZE00000007CDS6025787660258080-
GWHAAZE00000007CDS6025770460257793-
Transcript Sequence

Network for GWHGAAZE025367

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00071.23Ras151682.80E-57
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K07877RAB2A AMPK signaling pathway map04152

Gene Ontology

GO term OntologyName
GO:0003924molecular_functionGTPase activity
GO:0005525molecular_functionGTP binding

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE025367.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 30510152025303540455055Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf22.957
SRR3591706second leaf15.442
SRR3591707mature leaf14.962
SRR3591708Shoot apex23.128
SRR3591709Stem37.446
SRR3591710White floral bud29.747
SRR3591711White flower37.649
SRR3591712Green floral bud17.318
SRR3591713Yellow flower48.505
SRP173429 SRR8316895Juvenile bud stage 10.686
SRR8316896Juvenile bud stage 13.435
SRR8316897Juvenile bud stage 6.677
SRR8316894Third green stage 5.923
SRR8316900Third green stage 15.567
SRR8316901Third green stage 16.695
SRR8316898Complete white stage 12.859
SRR8316899Complete white stage 34.042
SRR8316903Complete white stage 22.026
SRR8316902Silver flowering stage13.176
SRR8316904Silver flowering stage18.189
SRR8316905Silver flowering stage9.604
SRR8316906Gold flowering stage 37.326
SRR8316907Gold flowering stage 29.492
SRR8316908Gold flowering stage 29.075
SRP132670SRR6706286Control28.046
SRR6706287Light intensity 50%25.766
SRR6706288Light intensity 20%27.319
CNP0000432CNS0095592Slightly white alabastrum(diploid) 110.888
CNS0095593Slightly white alabastrum(diploid) 216.689
CNS0095594Slightly white alabastrum(diploid) 311.757
CNS0095595Whole white alabastrum(diploid) 213.603
CNS0095596Whole white alabastrum(diploid) 310.028
CNS0095597Whole white alabastrum(diploid) 413.146
CNS0095598Silvery flower (diploied) 125.503
CNS0095599Silvery flower (diploied) 216.111
CNS0095600Silvery flower (diploied) 326.108
CNS0095601Golden flower (diploid) 124.952
CNS0095602Golden flower (diploid) 233.083
CNS0095603Golden flower (diploid) 330.380
CNS0095604Slightly white alabastrum(tetraploid) 117.765
CNS0095605Slightly white alabastrum(tetraploid) 217.775
CNS0095606Slightly white alabastrum(tetraploid) 327.992
CNS0095607Whole white alabastrum(tetraploid) 110.740
CNS0095608Whole white alabastrum(tetraploid) 212.982
CNS0095609Whole white alabastrum(tetraploid) 315.019
CNS0095610Silvery flower (tetraploid) 146.913
CNS0095611Silvery flower (tetraploid) 248.295
CNS0095612Silvery flower (tetraploid) 330.365
CNS0095613Golden flower (tetraploid) 134.066
CNS0095614Golden flower (tetraploid) 238.975
CNS0095615Golden flower (tetraploid) 346.030
CRA001975CRR073297Stem 118.971
CRR073298Stem 214.684
CRR073299Stem 319.378
CRR073300Leaf 117.701
CRR073301Leaf 219.166
CRR073302Leaf 315.709
CRR073303Juvenile bud 122.651
CRR073304Juvenile bud 216.160
CRR073305Juvenile bud 320.862
CRR073306Third green 16.614
CRR073307Third green 214.711
CRR073308Third green 310.612
CRR073309Second white 19.733
CRR073310Second white 211.893
CRR073311Second white 311.303
CRR073312Silver flowering 15.881
CRR073313Silver flowering 29.474
CRR073314Silver flowering 36.859
CRR073315Gold flowering 124.280
CRR073316Gold flowering 224.367
CRR073317Gold flowering 316.841
CRR073318Tawny withering 116.021
CRR073319Tawny withering 215.147
CRR073320Tawny withering 317.688