Detail information of GWHGAAZE025370


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010660834.12.42288E-47PREDICTED: GATA transcription factor 7-like [Vitis vinifera]
trEMBLtr|D7TWF4|D7TWF4_VITVI9E-48Putative uncharacterized protein {ECO:0000313|EMBL:CBI34829.3}
TAIR10AT5G40600.10.000002Without detailed annotation

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene6030375160317387-
GWHAAZE00000007mRNA6030375160317387-
GWHAAZE00000007exon6030375160304251-
GWHAAZE00000007exon6030434760304500-
GWHAAZE00000007exon6030463360304691-
GWHAAZE00000007exon6030503560305392-
GWHAAZE00000007exon6030547260305606-
GWHAAZE00000007exon6030613260306344-
GWHAAZE00000007exon6030790160308259-
GWHAAZE00000007exon6031727460317387-
GWHAAZE00000007five_prime_UTR6031727460317387-
GWHAAZE00000007five_prime_UTR6030824960308259-
GWHAAZE00000007CDS6030790160308248-
GWHAAZE00000007CDS6030613260306344-
GWHAAZE00000007CDS6030547260305606-
GWHAAZE00000007CDS6030524660305392-
GWHAAZE00000007three_prime_UTR6030503560305245-
GWHAAZE00000007three_prime_UTR6030463360304691-
GWHAAZE00000007three_prime_UTR6030434760304500-
GWHAAZE00000007three_prime_UTR6030375160304251-
Transcript Sequence

Network for GWHGAAZE025370

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00320.28GATA2092452.90E-09
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyC2C2-GATA

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006355biological_processregulation of transcription, DNA-templated
GO:0008270molecular_functionzinc ion binding
GO:0043565molecular_functionsequence-specific DNA binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf28.543
SRR3591706second leaf17.750
SRR3591707mature leaf16.601
SRR3591708Shoot apex30.367
SRR3591709Stem28.833
SRR3591710White floral bud23.439
SRR3591711White flower24.201
SRR3591712Green floral bud25.252
SRR3591713Yellow flower21.664
SRP173429 SRR8316895Juvenile bud stage 15.967
SRR8316896Juvenile bud stage 20.556
SRR8316897Juvenile bud stage 12.777
SRR8316894Third green stage 8.942
SRR8316900Third green stage 20.833
SRR8316901Third green stage 24.732
SRR8316898Complete white stage 8.173
SRR8316899Complete white stage 28.011
SRR8316903Complete white stage 13.785
SRR8316902Silver flowering stage9.497
SRR8316904Silver flowering stage12.062
SRR8316905Silver flowering stage5.338
SRR8316906Gold flowering stage 17.599
SRR8316907Gold flowering stage 16.364
SRR8316908Gold flowering stage 20.532
SRP132670SRR6706286Control11.866
SRR6706287Light intensity 50%13.151
SRR6706288Light intensity 20%14.343
CNP0000432CNS0095592Slightly white alabastrum(diploid) 125.066
CNS0095593Slightly white alabastrum(diploid) 226.644
CNS0095594Slightly white alabastrum(diploid) 322.695
CNS0095595Whole white alabastrum(diploid) 222.953
CNS0095596Whole white alabastrum(diploid) 320.738
CNS0095597Whole white alabastrum(diploid) 422.169
CNS0095598Silvery flower (diploied) 123.486
CNS0095599Silvery flower (diploied) 218.823
CNS0095600Silvery flower (diploied) 314.775
CNS0095601Golden flower (diploid) 120.136
CNS0095602Golden flower (diploid) 215.907
CNS0095603Golden flower (diploid) 315.211
CNS0095604Slightly white alabastrum(tetraploid) 124.148
CNS0095605Slightly white alabastrum(tetraploid) 222.640
CNS0095606Slightly white alabastrum(tetraploid) 330.538
CNS0095607Whole white alabastrum(tetraploid) 119.491
CNS0095608Whole white alabastrum(tetraploid) 216.064
CNS0095609Whole white alabastrum(tetraploid) 321.828
CNS0095610Silvery flower (tetraploid) 120.222
CNS0095611Silvery flower (tetraploid) 216.135
CNS0095612Silvery flower (tetraploid) 316.253
CNS0095613Golden flower (tetraploid) 120.761
CNS0095614Golden flower (tetraploid) 219.525
CNS0095615Golden flower (tetraploid) 319.579
CRA001975CRR073297Stem 116.114
CRR073298Stem 215.316
CRR073299Stem 310.206
CRR073300Leaf 116.212
CRR073301Leaf 214.044
CRR073302Leaf 38.493
CRR073303Juvenile bud 16.069
CRR073304Juvenile bud 25.450
CRR073305Juvenile bud 36.042
CRR073306Third green 12.876
CRR073307Third green 22.103
CRR073308Third green 33.746
CRR073309Second white 11.192
CRR073310Second white 25.134
CRR073311Second white 34.126
CRR073312Silver flowering 13.115
CRR073313Silver flowering 23.222
CRR073314Silver flowering 33.471
CRR073315Gold flowering 14.280
CRR073316Gold flowering 28.588
CRR073317Gold flowering 33.655
CRR073318Tawny withering 112.664
CRR073319Tawny withering 212.222
CRR073320Tawny withering 311.587