Gene detail

Detail information of GWHGAAZE025381

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011098792.1	0	PREDICTED: very-long-chain 3-oxoacyl-CoA reductase 1-like [Sesamum indicum]
COG	YP_001866735.1	1E-26	short-chain dehydrogenase/reductase SDR
Swissprot	tr\|Q8L9C4\|KCR1_ARATH	2E-161	Very-long-chain 3-oxoacyl-CoA reductase 1
trEMBL	tr\|M5XDF7\|M5XDF7_PRUPE	0	Uncharacterized protein {ECO:0000313\|EMBL:EMJ23959.1}
TAIR10	AT1G67730.1	6E-121	beta-ketoacyl reductase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	60423886	60429466	-
GWHAAZE00000007	mRNA	60423886	60429466	-
GWHAAZE00000007	exon	60428835	60429466	-
GWHAAZE00000007	exon	60427662	60427731	-
GWHAAZE00000007	exon	60423886	60424143	-
GWHAAZE00000007	CDS	60428835	60429466	-
GWHAAZE00000007	CDS	60427662	60427731	-
GWHAAZE00000007	CDS	60423886	60424143	-

Transcript Sequence
>GWHTAAZE025415 ATGGAGCTTTGTGAACAACTCAAATCTCAACCCATATGGCTCCTCCTCTTACTTTCTCTCGGTTCTTTCTCAATTCTCAAATCTTCCTTATCACTCCTCAAATGGGTCTACATCAATTTCCTCAGACCACCCAAGAATCTCAAGAAATACGGTTCATGGGCATTAGTAACCGGACCCACTGACGGCATTGGAAAGGGTTTCGCCGTCGAATTGGCTCGTAAGGGTATGAATTTAGTTCTTGTGGGTAGAAACCCGGATAAGCTAAAAGAGGTCGGATATTCGATTCAAGCTAAATTTCCCAAATCCCAGATAAAATCTGTGATTGTGGATTTTTCCGGTGACTTATCGGGTGGGGTAGGGAGGATCCGTGAAGCAATTGAGGGGTTAGATGTTGGGGTTTTGATCAATAATGTTGGGGCTTCATATCCATATGCTAGGTTTTTTCATGAAGTTGATGAGAAATTGTTGGGGGATTTGATTAAGATTAATATTGAAGGGACAACTAGGGTTACACAAGCGGTGTTGAATGGGATGATTAAGAGGAAGAAAGGGGCTATTGTTAATATTGGATCTGGTGCTGCTATTGTTATACCTTCTGATCCTCTTTATACTGTTTATGCTGCCACAAAAGCGTATGTGGATCAGTTCTCAAGATGCCTCTATGTAGAGTACAAGAAAAGCGGTATTGATGTGCAGTGCCAGGTGCCATTGTATGTCGCAACAAAGATGGCATCAATTCGAAGGTCGTCTTTCTTCGTTCCATCAACAGACGGGTATGCTCGGGCTGCCATGCGCTGGATAGGGTACGAACCACGGTGCACCCCTTACTGGCCTCACTCTGTTCTTTGGGCATTGGCTCGATCCTTGCCTGAGTCTATCATTGATTCGTGGCGTTTAGGGTTCTGCCTTAAAATACGAAAGAAGGGTCAACTCAAGGACTCCTCTAGGAAGAATGAATAG

Network for GWHGAAZE025381

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00106.26	adh_short	53	245	3.50E-37

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10251	HSD17B12, KAR, IFA38	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Fatty acid metabolism	map01212
		Fatty acid elongation	map00062
		Steroid hormone biosynthesis	map00140
		Biosynthesis of unsaturated fatty acids	map01040

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	56.348
	SRR3591706	second leaf	34.330
	SRR3591707	mature leaf	25.305
	SRR3591708	Shoot apex	65.569
	SRR3591709	Stem	51.180
	SRR3591710	White floral bud	31.425
	SRR3591711	White flower	27.426
	SRR3591712	Green floral bud	47.581
	SRR3591713	Yellow flower	26.919
SRP173429	SRR8316895	Juvenile bud stage	31.058
	SRR8316896	Juvenile bud stage	42.919
	SRR8316897	Juvenile bud stage	20.464
	SRR8316894	Third green stage	15.490
	SRR8316900	Third green stage	44.754
	SRR8316901	Third green stage	48.140
	SRR8316898	Complete white stage	12.045
	SRR8316899	Complete white stage	50.895
	SRR8316903	Complete white stage	19.168
	SRR8316902	Silver flowering stage	9.741
	SRR8316904	Silver flowering stage	12.626
	SRR8316905	Silver flowering stage	6.271
	SRR8316906	Gold flowering stage	19.379
	SRR8316907	Gold flowering stage	19.065
	SRR8316908	Gold flowering stage	22.303
SRP132670	SRR6706286	Control	40.533
	SRR6706287	Light intensity 50%	37.052
	SRR6706288	Light intensity 20%	42.661
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	48.960
	CNS0095593	Slightly white alabastrum(diploid) 2	46.343
	CNS0095594	Slightly white alabastrum(diploid) 3	44.556
	CNS0095595	Whole white alabastrum(diploid) 2	43.430
	CNS0095596	Whole white alabastrum(diploid) 3	41.106
	CNS0095597	Whole white alabastrum(diploid) 4	33.199
	CNS0095598	Silvery flower (diploied) 1	32.458
	CNS0095599	Silvery flower (diploied) 2	30.295
	CNS0095600	Silvery flower (diploied) 3	28.552
	CNS0095601	Golden flower (diploid) 1	24.662
	CNS0095602	Golden flower (diploid) 2	27.607
	CNS0095603	Golden flower (diploid) 3	29.072
	CNS0095604	Slightly white alabastrum(tetraploid) 1	63.503
	CNS0095605	Slightly white alabastrum(tetraploid) 2	57.201
	CNS0095606	Slightly white alabastrum(tetraploid) 3	83.925
	CNS0095607	Whole white alabastrum(tetraploid) 1	43.523
	CNS0095608	Whole white alabastrum(tetraploid) 2	38.656
	CNS0095609	Whole white alabastrum(tetraploid) 3	57.794
	CNS0095610	Silvery flower (tetraploid) 1	41.217
	CNS0095611	Silvery flower (tetraploid) 2	37.123
	CNS0095612	Silvery flower (tetraploid) 3	25.389
	CNS0095613	Golden flower (tetraploid) 1	31.842
	CNS0095614	Golden flower (tetraploid) 2	38.225
	CNS0095615	Golden flower (tetraploid) 3	23.314
CRA001975	CRR073297	Stem 1	26.293
	CRR073298	Stem 2	29.816
	CRR073299	Stem 3	35.581
	CRR073300	Leaf 1	25.396
	CRR073301	Leaf 2	25.830
	CRR073302	Leaf 3	31.133
	CRR073303	Juvenile bud 1	27.508
	CRR073304	Juvenile bud 2	28.617
	CRR073305	Juvenile bud 3	32.724
	CRR073306	Third green 1	5.959
	CRR073307	Third green 2	8.094
	CRR073308	Third green 3	8.200
	CRR073309	Second white 1	12.661
	CRR073310	Second white 2	9.410
	CRR073311	Second white 3	6.064
	CRR073312	Silver flowering 1	6.804
	CRR073313	Silver flowering 2	11.553
	CRR073314	Silver flowering 3	5.919
	CRR073315	Gold flowering 1	17.516
	CRR073316	Gold flowering 2	15.681
	CRR073317	Gold flowering 3	16.382
	CRR073318	Tawny withering 1	28.476
	CRR073319	Tawny withering 2	22.915
	CRR073320	Tawny withering 3	28.436