Gene detail

Detail information of GWHGAAZE025382

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002268612.1	2.10481E-82	PREDICTED: zinc finger CCCH domain-containing protein 67 [Vitis vinifera]
Swissprot	tr\|Q9STM4\|C3H43_ARATH	1E-67	Zinc finger CCCH domain-containing protein 43
trEMBL	tr\|D7SPX8\|D7SPX8_VITVI	8E-83	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI17707.3}
TAIR10	AT3G48440.1	1E-53	Zinc finger C-x8-C-x5-C-x3-H type family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	60451987	60461452	+
GWHAAZE00000007	mRNA	60451987	60461452	+
GWHAAZE00000007	exon	60451987	60452257	+
GWHAAZE00000007	exon	60455845	60455906	+
GWHAAZE00000007	exon	60456432	60456548	+
GWHAAZE00000007	exon	60457054	60457380	+
GWHAAZE00000007	exon	60458514	60458622	+
GWHAAZE00000007	exon	60460439	60460632	+
GWHAAZE00000007	exon	60461273	60461452	+
GWHAAZE00000007	CDS	60451987	60452257	+
GWHAAZE00000007	CDS	60455845	60455906	+
GWHAAZE00000007	CDS	60456432	60456548	+
GWHAAZE00000007	CDS	60457054	60457380	+
GWHAAZE00000007	CDS	60458514	60458622	+
GWHAAZE00000007	CDS	60460439	60460632	+
GWHAAZE00000007	CDS	60461273	60461452	+

Transcript Sequence
>GWHTAAZE025416 ATGGGAACTTGTGAGGACTACACCTCTGATAACTACCGCCAAAATTTGAGTGATCAACAACAACCAAAGCTAGGGTTTACATCCTACGCCAATGTCAATGTTACCGAGGAGGAATCTCTTGCTCGGATATTCGAGAATGTACGGCTGAATTCTAACGAAAATGTTGCCGCCGGCGATGATCACAACCATTCCAGCGGCAACAACAGTTGCCAGAATCTGCCCATCCGACCATACGCTGAGGATTGTCCCTATTACCTGCGGACTGGGACGTATGCAGAGGTTGAGAAAATATGTAGAAAAGCACTTAGTAATTTGGTACTTAATCACAACAAGTATTACCTAACAGCAGGAGGGTGCAAGTATGGAAACTCCTGTAGATTCAATCACTCCAAACCGGAATCTGAAATTGCTCTCACGGAACTTAACTTTCTAGGTTTGCCGATACGATTGGGAGAGAAAGAGTGTCCATTCTACATGCGCAATGGTTCGTGTGGATATGGAGCTAGCTGTAGGTTTCACCATCCTGATCCTACCACTGTTGGCGGAGCTGACACTGGAAATTCGACTCTTGGTGGTTACTCCATGGGGCAATTCAACCATTCTTCAGGGAATTTTGACGGTGGTTATTCCATGGGACAACCAGCTCAGGCAGCCTATTATTCCCCCATGTTATCTGACATGACCAGTCCCTACCAGAACAACTGCTCGTCTTACATGCCTTCGATGGCATTACTTCCACAAGGGGCGGCTCAAAGTCGTGAATGGAATGTGCATCAGATTATTGGGATCCGCTACATCTCCTACGCATGCCCTTGCCTTATATATCCTTTCTCTGGAACGAGCGCCACAGTACTCTTTCCAGTTCAGTCTCGCCATGAGCTATCTTGTTATTCTCGTCAAACAACTGAGATTCCTGTGATGGAGATTAGAGAAGAATACCCTGAACGACCAGGTCGGCGTGAGTGCGCATTGTACATGAAAACTGGGGAGTGTATGTTTAAATCTGAATGTCCATTTCACCATCCCAAGGACAGGCCGCCGACAACTCCTCTGAATGAAAAGCTCCTGCCGTTGAGACCTGATAAACCCGTCTGCCCGGACTATGAACATATTGGTCTTTGCAAGTGGGGGCCATCTTGTAAGTACAACCATCCTGATATTTATGCGGCTAAAGTTCCCTCAAGACCACAAGGGTCCGCGAATACTATCATGGCTCCCTGGACCGCTTGGAACTTGGAGGACGAGAACTTAGAAGATTAG

Network for GWHGAAZE025382

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00642.25	zf-CCCH	111	131	1.50E-05
PF00642.25	zf-CCCH	152	175	3.30E-09
PF00642.25	zf-CCCH	317	343	0.00032
PF00642.25	zf-CCCH	361	385	0.0002

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C3H

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046872	molecular_function	metal ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.196
	SRR3591706	second leaf	1.940
	SRR3591707	mature leaf	2.073
	SRR3591708	Shoot apex	7.635
	SRR3591709	Stem	3.500
	SRR3591710	White floral bud	4.178
	SRR3591711	White flower	3.964
	SRR3591712	Green floral bud	7.979
	SRR3591713	Yellow flower	2.013
SRP173429	SRR8316895	Juvenile bud stage	4.795
	SRR8316896	Juvenile bud stage	7.042
	SRR8316897	Juvenile bud stage	4.125
	SRR8316894	Third green stage	2.516
	SRR8316900	Third green stage	4.869
	SRR8316901	Third green stage	5.513
	SRR8316898	Complete white stage	0.912
	SRR8316899	Complete white stage	3.750
	SRR8316903	Complete white stage	1.440
	SRR8316902	Silver flowering stage	0.333
	SRR8316904	Silver flowering stage	0.573
	SRR8316905	Silver flowering stage	0.196
	SRR8316906	Gold flowering stage	0.757
	SRR8316907	Gold flowering stage	1.075
	SRR8316908	Gold flowering stage	1.222
SRP132670	SRR6706286	Control	6.536
	SRR6706287	Light intensity 50%	6.691
	SRR6706288	Light intensity 20%	7.193
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.979
	CNS0095593	Slightly white alabastrum(diploid) 2	9.222
	CNS0095594	Slightly white alabastrum(diploid) 3	9.147
	CNS0095595	Whole white alabastrum(diploid) 2	5.232
	CNS0095596	Whole white alabastrum(diploid) 3	6.254
	CNS0095597	Whole white alabastrum(diploid) 4	6.945
	CNS0095598	Silvery flower (diploied) 1	7.933
	CNS0095599	Silvery flower (diploied) 2	8.387
	CNS0095600	Silvery flower (diploied) 3	3.393
	CNS0095601	Golden flower (diploid) 1	5.994
	CNS0095602	Golden flower (diploid) 2	3.953
	CNS0095603	Golden flower (diploid) 3	3.442
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.555
	CNS0095605	Slightly white alabastrum(tetraploid) 2	14.245
	CNS0095606	Slightly white alabastrum(tetraploid) 3	17.342
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.556
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.399
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.291
	CNS0095610	Silvery flower (tetraploid) 1	3.928
	CNS0095611	Silvery flower (tetraploid) 2	3.459
	CNS0095612	Silvery flower (tetraploid) 3	3.426
	CNS0095613	Golden flower (tetraploid) 1	2.056
	CNS0095614	Golden flower (tetraploid) 2	3.000
	CNS0095615	Golden flower (tetraploid) 3	0.496
CRA001975	CRR073297	Stem 1	12.273
	CRR073298	Stem 2	9.286
	CRR073299	Stem 3	9.874
	CRR073300	Leaf 1	6.573
	CRR073301	Leaf 2	6.331
	CRR073302	Leaf 3	4.614
	CRR073303	Juvenile bud 1	5.790
	CRR073304	Juvenile bud 2	3.268
	CRR073305	Juvenile bud 3	6.222
	CRR073306	Third green 1	0.221
	CRR073307	Third green 2	0.117
	CRR073308	Third green 3	0.635
	CRR073309	Second white 1	0.147
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.100
	CRR073312	Silver flowering 1	0.137
	CRR073313	Silver flowering 2	0.140
	CRR073314	Silver flowering 3	0.337
	CRR073315	Gold flowering 1	0.477
	CRR073316	Gold flowering 2	1.609
	CRR073317	Gold flowering 3	1.281
	CRR073318	Tawny withering 1	2.062
	CRR073319	Tawny withering 2	3.044
	CRR073320	Tawny withering 3	1.487