Gene detail

Detail information of GWHGAAZE025394

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP16655.1	1.7154E-144	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9LU91\|SKI14_ARATH	1E-87	F-box protein SKIP14
trEMBL	tr\|A0A068V786\|A0A068V786_COFCA	6E-145	Coffea canephora DH200=94 genomic scaffold, scaffold_135 {ECO:0000313\|EMBL:CDP16655.1}
TAIR10	AT3G26000.1	1E-75	Ribonuclease inhibitor

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	60597047	60599522	+
GWHAAZE00000007	mRNA	60597047	60599522	+
GWHAAZE00000007	exon	60597047	60598069	+
GWHAAZE00000007	exon	60599016	60599522	+
GWHAAZE00000007	CDS	60597047	60598069	+
GWHAAZE00000007	CDS	60599016	60599522	+

Transcript Sequence
>GWHTAAZE025428 ATGGGAAGCTTCGTAGAGGAATGCACAAATACGATTAATGATGGTTTTGGTGATAATTGTAATTTCAATTTTGAATCAAAGAGTTCTTATGATTGCGGAAAGGGTAGCATTGATAAGGTTTCTCAAGATATTGTTGATTTGTTGCCGTCTGATCCCTTTAGCATGGATATAAGTGCTAATTTCAAAGCAATTATAGATTGGATTGAGGAGTTTGAGGATGACATAGGGTTAAACACCCTTGGACTTGGGGTTAATTTCAAATCAAAGAGTTCTTATGATTGCAGAAAGGATTACAGTGATATGGTTTCTGAAGATATTATTGATATTGTTGATTTGTTACCGTCTGATCCCTTTAGCATGGATATAAGTGCTAAGTTCCAGGCAATTATAGATTGGATTGAGGAGTTTGAGGATGATTTAGGGCTAAACACCCTTGGACTTGGGATTAATGAAACAGATATGAAGACGGGGGATGATGAATTATGTGCTGGGTTCAATTTGATTTGGAAGGGACCAATGAGGTTAGTTGACATGAAGACCGAGGGAAAACTAGTTGGATCTTCAATGGAGAAAGAATCTCTTGTGGATGGGTTGTGTGATAATTCTTCTTCAGTAGATGGTAACGTAGTAGAGGATTTAATGGGTTTTAGCTATGAAAAGTATTGTGTTAATAGCAATATTATAACTAAGGAAGCTAAAGGGCATGCAAAAAATTATTGCGATGACGATAGAGGTGATCCTCATGATGCTTTGTTTTTCGCTCTTGGTTATTTGGGAATAAGAGACCTTCTTTGTGTTGAAAGGGTTTGCAAGTCTTTGAAGGACGCAGTGCGGACCGATCCTCTTCTGTGGAAGAATATTTACATAGATAGGCCGTTGAGTGATAACATCACTGATGAAGCTCTTTTAAAGTTAACTAGTAGGGCTCAAGGTAGTCTTCAATGCTTGAGTCTTGTTTGGTGCTTCAAGATCTCAGATAATGGTATAAAGCGTGTTCTTGAAAGAAATCCACAATTGACAAAGCTAAGTGTTCCAGGATGTGTGAGAATCAGCCTTGAAGGTATCCTGTGTAACTTAAAGGTCTTCAATTCTGCTGGTACAAGTGGAATAAAGCACCTAAGAACTGGTGGGATGCTTAGTGTAACAAAAAGGCACTTTGAAGAGTTGAAGTTTTTGCTAGGTGCAGATAATCAAAATCAGCCATGTACCAACAAACCTCGATTCTACCATGGGCCGCATATGTATCTCTCGTTTGATGATGATCGTGCCATCGACATTGAGACATGCCCGAGGTGCAAGAAAGTCAGGCAAGTCTACGATTGCCCAAAAGAGAGTTGCCACAGTGCCAACCAGCTGTGCAAGGCTTGTACTTTCTGCATTGCTCGTTGTATTAATTGTGGTTGCTGCATTGATGGACATGCTTATGAGGAGACATTTTGTCTAGACTTGATTTGTTTAGATTGTTGGAAGCAGCTCTTGAATTGCCAAGAGTCGTTAGTGGACGTGATTTCTGGTAGGCATTTCGTCTAG

Network for GWHGAAZE025394

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12937.8	F-box-like	247	289	7.80E-06

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	12.268
	SRR3591706	second leaf	7.443
	SRR3591707	mature leaf	11.712
	SRR3591708	Shoot apex	8.719
	SRR3591709	Stem	15.698
	SRR3591710	White floral bud	11.740
	SRR3591711	White flower	18.261
	SRR3591712	Green floral bud	6.559
	SRR3591713	Yellow flower	14.311
SRP173429	SRR8316895	Juvenile bud stage	6.348
	SRR8316896	Juvenile bud stage	7.080
	SRR8316897	Juvenile bud stage	3.487
	SRR8316894	Third green stage	2.012
	SRR8316900	Third green stage	4.637
	SRR8316901	Third green stage	4.632
	SRR8316898	Complete white stage	2.189
	SRR8316899	Complete white stage	9.384
	SRR8316903	Complete white stage	7.149
	SRR8316902	Silver flowering stage	5.359
	SRR8316904	Silver flowering stage	8.087
	SRR8316905	Silver flowering stage	3.667
	SRR8316906	Gold flowering stage	10.326
	SRR8316907	Gold flowering stage	12.328
	SRR8316908	Gold flowering stage	13.223
SRP132670	SRR6706286	Control	1.433
	SRR6706287	Light intensity 50%	1.730
	SRR6706288	Light intensity 20%	1.813
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.948
	CNS0095593	Slightly white alabastrum(diploid) 2	3.213
	CNS0095594	Slightly white alabastrum(diploid) 3	5.492
	CNS0095595	Whole white alabastrum(diploid) 2	3.450
	CNS0095596	Whole white alabastrum(diploid) 3	2.252
	CNS0095597	Whole white alabastrum(diploid) 4	4.821
	CNS0095598	Silvery flower (diploied) 1	12.845
	CNS0095599	Silvery flower (diploied) 2	9.768
	CNS0095600	Silvery flower (diploied) 3	13.015
	CNS0095601	Golden flower (diploid) 1	11.395
	CNS0095602	Golden flower (diploid) 2	16.172
	CNS0095603	Golden flower (diploid) 3	14.032
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.420
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.304
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.522
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.133
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.738
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.253
	CNS0095610	Silvery flower (tetraploid) 1	11.474
	CNS0095611	Silvery flower (tetraploid) 2	10.314
	CNS0095612	Silvery flower (tetraploid) 3	16.265
	CNS0095613	Golden flower (tetraploid) 1	7.617
	CNS0095614	Golden flower (tetraploid) 2	10.222
	CNS0095615	Golden flower (tetraploid) 3	13.655
CRA001975	CRR073297	Stem 1	3.938
	CRR073298	Stem 2	3.114
	CRR073299	Stem 3	2.159
	CRR073300	Leaf 1	2.834
	CRR073301	Leaf 2	3.544
	CRR073302	Leaf 3	1.956
	CRR073303	Juvenile bud 1	1.937
	CRR073304	Juvenile bud 2	1.113
	CRR073305	Juvenile bud 3	2.358
	CRR073306	Third green 1	4.346
	CRR073307	Third green 2	4.446
	CRR073308	Third green 3	5.171
	CRR073309	Second white 1	3.234
	CRR073310	Second white 2	8.823
	CRR073311	Second white 3	8.736
	CRR073312	Silver flowering 1	9.317
	CRR073313	Silver flowering 2	6.732
	CRR073314	Silver flowering 3	8.128
	CRR073315	Gold flowering 1	2.043
	CRR073316	Gold flowering 2	3.778
	CRR073317	Gold flowering 3	1.349
	CRR073318	Tawny withering 1	4.936
	CRR073319	Tawny withering 2	5.366
	CRR073320	Tawny withering 3	3.679