Detail information of GWHGAAZE025402


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_008231164.10PREDICTED: cytochrome c1-2, heme protein, mitochondrial [Prunus mume]
COGYP_006373744.18E-79Cytochrome c1, heme protein
Swissprottr|P25076|CY11_SOLTU0Cytochrome c1-1, heme protein, mitochondrial (Precursor)
trEMBLtr|V4TXZ0|V4TXZ0_9ROSI0Uncharacterized protein {ECO:0000313|EMBL:ESR54746.1}
TAIR10AT5G40810.15E-133Cytochrome C1 family

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene6072911860734383-
GWHAAZE00000007mRNA6072911860734383-
GWHAAZE00000007exon6073432460734383-
GWHAAZE00000007exon6073421860734243-
GWHAAZE00000007exon6073405360734125-
GWHAAZE00000007exon6073270560732925-
GWHAAZE00000007exon6073104460731323-
GWHAAZE00000007exon6073065160730722-
GWHAAZE00000007exon6072962460729740-
GWHAAZE00000007exon6072943360729498-
GWHAAZE00000007exon6072911860729234-
GWHAAZE00000007CDS6073432460734383-
GWHAAZE00000007CDS6073421860734243-
GWHAAZE00000007CDS6073405360734125-
GWHAAZE00000007CDS6073270560732925-
GWHAAZE00000007CDS6073104460731323-
GWHAAZE00000007CDS6073065160730722-
GWHAAZE00000007CDS6072962460729740-
GWHAAZE00000007CDS6072943360729498-
GWHAAZE00000007CDS6072911860729234-
Transcript Sequence

Network for GWHGAAZE025402

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0160
CFinderModule0218


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02167.16Cytochrom_C11143302.10E-97
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00413CYC1, CYT1, petC Metabolic pathways map01100
Oxidative phosphorylationmap00190
Two-component systemmap02020
Cardiac muscle contractionmap04260
Thermogenesismap04714

Gene Ontology

GO term OntologyName
GO:0009055molecular_functionelectron transfer activity
GO:0020037molecular_functionheme binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf181.376
SRR3591706second leaf100.550
SRR3591707mature leaf62.831
SRR3591708Shoot apex122.958
SRR3591709Stem106.524
SRR3591710White floral bud173.812
SRR3591711White flower191.277
SRR3591712Green floral bud231.208
SRR3591713Yellow flower219.789
SRP173429 SRR8316895Juvenile bud stage 79.897
SRR8316896Juvenile bud stage 133.166
SRR8316897Juvenile bud stage 66.251
SRR8316894Third green stage 53.748
SRR8316900Third green stage 236.625
SRR8316901Third green stage 217.141
SRR8316898Complete white stage 83.909
SRR8316899Complete white stage 157.603
SRR8316903Complete white stage 109.422
SRR8316902Silver flowering stage101.962
SRR8316904Silver flowering stage108.364
SRR8316905Silver flowering stage63.141
SRR8316906Gold flowering stage 228.645
SRR8316907Gold flowering stage 254.292
SRR8316908Gold flowering stage 289.595
SRP132670SRR6706286Control126.104
SRR6706287Light intensity 50%134.412
SRR6706288Light intensity 20%151.778
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1133.622
CNS0095593Slightly white alabastrum(diploid) 2139.776
CNS0095594Slightly white alabastrum(diploid) 3124.828
CNS0095595Whole white alabastrum(diploid) 2142.410
CNS0095596Whole white alabastrum(diploid) 3181.061
CNS0095597Whole white alabastrum(diploid) 4134.650
CNS0095598Silvery flower (diploied) 170.538
CNS0095599Silvery flower (diploied) 285.371
CNS0095600Silvery flower (diploied) 3149.535
CNS0095601Golden flower (diploid) 182.853
CNS0095602Golden flower (diploid) 2133.735
CNS0095603Golden flower (diploid) 3132.121
CNS0095604Slightly white alabastrum(tetraploid) 1178.306
CNS0095605Slightly white alabastrum(tetraploid) 2162.377
CNS0095606Slightly white alabastrum(tetraploid) 3161.167
CNS0095607Whole white alabastrum(tetraploid) 1176.943
CNS0095608Whole white alabastrum(tetraploid) 2200.501
CNS0095609Whole white alabastrum(tetraploid) 3239.031
CNS0095610Silvery flower (tetraploid) 1200.378
CNS0095611Silvery flower (tetraploid) 2178.596
CNS0095612Silvery flower (tetraploid) 3234.381
CNS0095613Golden flower (tetraploid) 1184.413
CNS0095614Golden flower (tetraploid) 2200.589
CNS0095615Golden flower (tetraploid) 3173.249
CRA001975CRR073297Stem 1145.007
CRR073298Stem 2143.558
CRR073299Stem 3174.989
CRR073300Leaf 1217.358
CRR073301Leaf 2231.765
CRR073302Leaf 3252.727
CRR073303Juvenile bud 1299.601
CRR073304Juvenile bud 2297.330
CRR073305Juvenile bud 3261.838
CRR073306Third green 1254.573
CRR073307Third green 2205.132
CRR073308Third green 3196.909
CRR073309Second white 1339.056
CRR073310Second white 2238.299
CRR073311Second white 3223.841
CRR073312Silver flowering 1291.932
CRR073313Silver flowering 2336.865
CRR073314Silver flowering 3285.542
CRR073315Gold flowering 174.130
CRR073316Gold flowering 282.315
CRR073317Gold flowering 364.238
CRR073318Tawny withering 1136.646
CRR073319Tawny withering 2125.160
CRR073320Tawny withering 3127.604