Detail information of GWHGAAZE025404


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010258441.10PREDICTED: cytochrome c1-2, heme protein, mitochondrial-like [Nelumbo nucifera]
COGYP_006373744.11E-78Cytochrome c1, heme protein
Swissprottr|P25076|CY11_SOLTU0Cytochrome c1-1, heme protein, mitochondrial (Precursor)
trEMBLtr|U5GJY0|U5GJY0_POPTR0Uncharacterized protein {ECO:0000313|EMBL:ERP62621.1}
TAIR10AT5G40810.11E-129Cytochrome C1 family

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene6076119460765055-
GWHAAZE00000007mRNA6076119460765055-
GWHAAZE00000007exon6076119460761310-
GWHAAZE00000007exon6076150960761574-
GWHAAZE00000007exon6076169660761812-
GWHAAZE00000007exon6076269260762763-
GWHAAZE00000007exon6076308360763362-
GWHAAZE00000007exon6076480560765055-
GWHAAZE00000007CDS6076480560765055-
GWHAAZE00000007CDS6076308360763362-
GWHAAZE00000007CDS6076269260762763-
GWHAAZE00000007CDS6076169660761812-
GWHAAZE00000007CDS6076150960761574-
GWHAAZE00000007CDS6076119460761310-
Transcript Sequence

Network for GWHGAAZE025404

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0218


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02167.16Cytochrom_C1712878.70E-98
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00413CYC1, CYT1, petC Metabolic pathways map01100
Oxidative phosphorylationmap00190
Two-component systemmap02020
Cardiac muscle contractionmap04260
Thermogenesismap04714

Gene Ontology

GO term OntologyName
GO:0009055molecular_functionelectron transfer activity
GO:0020037molecular_functionheme binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf97.384
SRR3591706second leaf68.458
SRR3591707mature leaf43.404
SRR3591708Shoot apex76.954
SRR3591709Stem58.387
SRR3591710White floral bud86.714
SRR3591711White flower101.859
SRR3591712Green floral bud133.120
SRR3591713Yellow flower130.897
SRP173429 SRR8316895Juvenile bud stage 63.734
SRR8316896Juvenile bud stage 105.629
SRR8316897Juvenile bud stage 46.782
SRR8316894Third green stage 47.751
SRR8316900Third green stage 179.108
SRR8316901Third green stage 167.056
SRR8316898Complete white stage 54.775
SRR8316899Complete white stage 105.386
SRR8316903Complete white stage 68.412
SRR8316902Silver flowering stage53.234
SRR8316904Silver flowering stage60.466
SRR8316905Silver flowering stage34.108
SRR8316906Gold flowering stage 136.943
SRR8316907Gold flowering stage 136.342
SRR8316908Gold flowering stage 126.349
SRP132670SRR6706286Control97.212
SRR6706287Light intensity 50%99.900
SRR6706288Light intensity 20%112.435
CNP0000432CNS0095592Slightly white alabastrum(diploid) 193.291
CNS0095593Slightly white alabastrum(diploid) 2100.139
CNS0095594Slightly white alabastrum(diploid) 394.150
CNS0095595Whole white alabastrum(diploid) 2104.118
CNS0095596Whole white alabastrum(diploid) 3126.382
CNS0095597Whole white alabastrum(diploid) 486.800
CNS0095598Silvery flower (diploied) 149.699
CNS0095599Silvery flower (diploied) 261.134
CNS0095600Silvery flower (diploied) 3103.704
CNS0095601Golden flower (diploid) 145.195
CNS0095602Golden flower (diploid) 297.902
CNS0095603Golden flower (diploid) 392.881
CNS0095604Slightly white alabastrum(tetraploid) 1135.765
CNS0095605Slightly white alabastrum(tetraploid) 2122.008
CNS0095606Slightly white alabastrum(tetraploid) 3114.817
CNS0095607Whole white alabastrum(tetraploid) 1132.517
CNS0095608Whole white alabastrum(tetraploid) 2127.994
CNS0095609Whole white alabastrum(tetraploid) 3170.378
CNS0095610Silvery flower (tetraploid) 1110.983
CNS0095611Silvery flower (tetraploid) 2107.300
CNS0095612Silvery flower (tetraploid) 3130.467
CNS0095613Golden flower (tetraploid) 192.269
CNS0095614Golden flower (tetraploid) 2107.656
CNS0095615Golden flower (tetraploid) 3115.721
CRA001975CRR073297Stem 1138.358
CRR073298Stem 2127.258
CRR073299Stem 3154.855
CRR073300Leaf 1174.607
CRR073301Leaf 2170.129
CRR073302Leaf 3186.189
CRR073303Juvenile bud 1192.222
CRR073304Juvenile bud 2176.688
CRR073305Juvenile bud 3173.422
CRR073306Third green 1135.046
CRR073307Third green 2107.590
CRR073308Third green 3113.226
CRR073309Second white 1186.323
CRR073310Second white 2136.718
CRR073311Second white 3129.191
CRR073312Silver flowering 1158.075
CRR073313Silver flowering 2183.068
CRR073314Silver flowering 3168.653
CRR073315Gold flowering 163.120
CRR073316Gold flowering 271.387
CRR073317Gold flowering 365.768
CRR073318Tawny withering 1111.713
CRR073319Tawny withering 291.792
CRR073320Tawny withering 398.937