Gene detail

Detail information of GWHGAAZE025408

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	NP_001275309.1	0	sulfite oxidase-like [Solanum tuberosum]
COG	YP_001545630.1	2E-52	sulfite oxidase
Swissprot	tr\|Q9S850\|SUOX_ARATH	0	Sulfite oxidase
trEMBL	tr\|Q2V993\|Q2V993_SOLTU	0	Sulfite oxidase-like {ECO:0000313\|EMBL:ABB86275.1}
TAIR10	AT3G01910.1	0	sulfite oxidase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	60811357	60816724	+
GWHAAZE00000007	mRNA	60811357	60816724	+
GWHAAZE00000007	exon	60811357	60811499	+
GWHAAZE00000007	exon	60811605	60811667	+
GWHAAZE00000007	exon	60811767	60811803	+
GWHAAZE00000007	exon	60811946	60812027	+
GWHAAZE00000007	exon	60813190	60813308	+
GWHAAZE00000007	exon	60813449	60813544	+
GWHAAZE00000007	exon	60813919	60814029	+
GWHAAZE00000007	exon	60814123	60814224	+
GWHAAZE00000007	exon	60814811	60814858	+
GWHAAZE00000007	exon	60815296	60815511	+
GWHAAZE00000007	exon	60816608	60816724	+
GWHAAZE00000007	CDS	60811357	60811499	+
GWHAAZE00000007	CDS	60811605	60811667	+
GWHAAZE00000007	CDS	60811767	60811803	+
GWHAAZE00000007	CDS	60811946	60812027	+
GWHAAZE00000007	CDS	60813190	60813308	+
GWHAAZE00000007	CDS	60813449	60813544	+
GWHAAZE00000007	CDS	60813919	60814029	+
GWHAAZE00000007	CDS	60814123	60814224	+
GWHAAZE00000007	CDS	60814811	60814858	+
GWHAAZE00000007	CDS	60815296	60815511	+
GWHAAZE00000007	CDS	60816608	60816724	+

Transcript Sequence
>GWHTAAZE025442 ATTTTATTTTTTCCATTTTTGGTGCAGGAGCCCTTCAATGCAGAACCACCTCGTTCAGTTCTGATTTCTTCTTATGTGACTCCTGTGGATTTTTTCTACAAGAGAAACCATGGACCAATACCAATTGTTGATGACATAGAAAGATATAGTGTTTCTATAACTGGGCTAATTGAAAACCCCAAAGAACTGTTCATGAAAGAGATTCGGAAGCTTCCAAAATGTAATGTCACTGCCATTTTACAGTGTGCTGGTAATAGGAGGACTGCCATGAGCAAAACCAGGGCAGTGAAAGGAGTTGGGTGGGGTGTTTCTGCGGTAGGAAATGCTGTTTGGGGTGGAGCCAAATTGGCAGATGTCCTTGAACTCATTGGAATCCCCATGTTAACTGGTGCCACATCACTGGGTGGAAAGCATGTAGAATTTGTGAGCATTGACAAGTGCAAGGAGGAGAAAGGGGGTCCTTATAAGGCGTCAATTCCATTGAGTCAGGCCACAAACCCAGAAGCAGATGTTTTACTTGCCTATGAAATGAACGGAGAGCCTCTTAACAGGGATCATGGTTATCCACTTCGGGTAGTTGTCCCTGGTGTTATTGGTGCCCGTTCTGTTAAATGGCTCGATTCCATCAACATAATCAGTGAAGAATGCCAGGGCTTCTTTATGCAAAAAGACTATAAAATGTTTCCACCTTCAGTTAATTGGGATAACATCAATTGGTCTACCAGAAGACCACAGATGGATTTTCCTGTACAGTCTGTAATATGCTCCTTGGATGACGTGAGTGTGGTAAAGCATGGAAAGATAACTATCAAGGGATATGCATTATCCGGAGGTGGGCGTGGAATTGAGAGAGTAGATGTATCAGTTGATGGTGGTAAAACTTGGCTGGAAGCCACCAGATACCAGAAAACGGGCGTTACATATATTGCCGATGACCCAAAAAGCGACAAATGGGCATGGGTATTTTTTGAGGCCAAGGCTGATATAGCCCAAAGTGCAGAGATAGTCGCAAAAGCAGTGGATACAGCTGCAAATGTGCAACCTGAAAATGTTGAATTCATATGGAATTTGAGAGGGATACTGAACACTTCGTGGCATCGGGTTCATGTTCGGGTTGGGCATTCGAATATGTAA

Network for GWHGAAZE025408

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00174.20	Oxidored_molyb	37	219	2.90E-55
PF03404.17	Mo-co_dimer	244	371	4.40E-38

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00387	SUOX	Metabolic pathways	map01100
		Microbial metabolism in diverse environments	map01120
		Sulfur metabolism	map00920

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0042128	biological_process	nitrate assimilation
GO:0016491	molecular_function	oxidoreductase activity
GO:0030151	molecular_function	molybdenum ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	37.899
	SRR3591706	second leaf	50.322
	SRR3591707	mature leaf	69.711
	SRR3591708	Shoot apex	31.627
	SRR3591709	Stem	36.357
	SRR3591710	White floral bud	58.163
	SRR3591711	White flower	110.815
	SRR3591712	Green floral bud	63.556
	SRR3591713	Yellow flower	339.256
SRP173429	SRR8316895	Juvenile bud stage	38.886
	SRR8316896	Juvenile bud stage	55.798
	SRR8316897	Juvenile bud stage	23.766
	SRR8316894	Third green stage	24.941
	SRR8316900	Third green stage	86.748
	SRR8316901	Third green stage	75.936
	SRR8316898	Complete white stage	25.643
	SRR8316899	Complete white stage	90.694
	SRR8316903	Complete white stage	34.748
	SRR8316902	Silver flowering stage	17.260
	SRR8316904	Silver flowering stage	20.543
	SRR8316905	Silver flowering stage	10.319
	SRR8316906	Gold flowering stage	38.518
	SRR8316907	Gold flowering stage	40.615
	SRR8316908	Gold flowering stage	34.781
SRP132670	SRR6706286	Control	85.442
	SRR6706287	Light intensity 50%	83.760
	SRR6706288	Light intensity 20%	87.836
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	55.914
	CNS0095593	Slightly white alabastrum(diploid) 2	52.650
	CNS0095594	Slightly white alabastrum(diploid) 3	54.247
	CNS0095595	Whole white alabastrum(diploid) 2	52.144
	CNS0095596	Whole white alabastrum(diploid) 3	63.305
	CNS0095597	Whole white alabastrum(diploid) 4	51.649
	CNS0095598	Silvery flower (diploied) 1	53.969
	CNS0095599	Silvery flower (diploied) 2	45.153
	CNS0095600	Silvery flower (diploied) 3	49.839
	CNS0095601	Golden flower (diploid) 1	44.963
	CNS0095602	Golden flower (diploid) 2	53.472
	CNS0095603	Golden flower (diploid) 3	53.681
	CNS0095604	Slightly white alabastrum(tetraploid) 1	74.450
	CNS0095605	Slightly white alabastrum(tetraploid) 2	67.302
	CNS0095606	Slightly white alabastrum(tetraploid) 3	83.154
	CNS0095607	Whole white alabastrum(tetraploid) 1	55.899
	CNS0095608	Whole white alabastrum(tetraploid) 2	55.152
	CNS0095609	Whole white alabastrum(tetraploid) 3	117.688
	CNS0095610	Silvery flower (tetraploid) 1	65.008
	CNS0095611	Silvery flower (tetraploid) 2	74.695
	CNS0095612	Silvery flower (tetraploid) 3	55.539
	CNS0095613	Golden flower (tetraploid) 1	31.985
	CNS0095614	Golden flower (tetraploid) 2	50.529
	CNS0095615	Golden flower (tetraploid) 3	15.557
CRA001975	CRR073297	Stem 1	46.575
	CRR073298	Stem 2	46.072
	CRR073299	Stem 3	38.880
	CRR073300	Leaf 1	58.371
	CRR073301	Leaf 2	56.853
	CRR073302	Leaf 3	57.331
	CRR073303	Juvenile bud 1	59.824
	CRR073304	Juvenile bud 2	55.107
	CRR073305	Juvenile bud 3	66.022
	CRR073306	Third green 1	18.074
	CRR073307	Third green 2	15.873
	CRR073308	Third green 3	15.696
	CRR073309	Second white 1	24.313
	CRR073310	Second white 2	22.378
	CRR073311	Second white 3	19.041
	CRR073312	Silver flowering 1	17.156
	CRR073313	Silver flowering 2	19.616
	CRR073314	Silver flowering 3	12.574
	CRR073315	Gold flowering 1	38.552
	CRR073316	Gold flowering 2	45.297
	CRR073317	Gold flowering 3	30.362
	CRR073318	Tawny withering 1	29.438
	CRR073319	Tawny withering 2	27.449
	CRR073320	Tawny withering 3	28.080