Detail information of GWHGAAZE025417


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCAN69961.10hypothetical protein VITISV_008739 [Vitis vinifera]
COGYP_004775215.10.000000004RHS repeat-associated core domain-containing protein
Swissprottr|Q8LFN2|Y3037_ARATH3E-115Probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 (Precursor)
trEMBLtr|F6I5K4|F6I5K4_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB62222.1}
TAIR10AT5G14210.12E-154Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene6092892460932874-
GWHAAZE00000007mRNA6092892460932874-
GWHAAZE00000007exon6093221760932874-
GWHAAZE00000007exon6093198860932121-
GWHAAZE00000007exon6093106660931246-
GWHAAZE00000007exon6093036360930574-
GWHAAZE00000007exon6093024560930270-
GWHAAZE00000007exon6092962260929733-
GWHAAZE00000007exon6092892460929157-
GWHAAZE00000007CDS6093221760932874-
GWHAAZE00000007CDS6093198860932121-
GWHAAZE00000007CDS6093106660931246-
GWHAAZE00000007CDS6093036360930574-
GWHAAZE00000007CDS6093024560930270-
GWHAAZE00000007CDS6092962260929733-
GWHAAZE00000007CDS6092892460929157-
Transcript Sequence

Network for GWHGAAZE025417

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13855.7LRR_8521103.90E-07
PF07714.18PK_Tyr_Ser-Thr2744922.00E-15
Protein Sequence

Gene family

Gene familysubfamily
Protein Kinases FamilyRLK-Pelle_LRR-VI-1

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006468biological_processprotein phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf5.294
SRR3591706second leaf19.757
SRR3591707mature leaf15.521
SRR3591708Shoot apex12.731
SRR3591709Stem6.809
SRR3591710White floral bud3.383
SRR3591711White flower3.060
SRR3591712Green floral bud2.545
SRR3591713Yellow flower0.334
SRP173429 SRR8316895Juvenile bud stage 2.598
SRR8316896Juvenile bud stage 3.080
SRR8316897Juvenile bud stage 1.162
SRR8316894Third green stage 0.856
SRR8316900Third green stage 2.105
SRR8316901Third green stage 2.075
SRR8316898Complete white stage 0.801
SRR8316899Complete white stage 3.952
SRR8316903Complete white stage 1.396
SRR8316902Silver flowering stage0.436
SRR8316904Silver flowering stage0.735
SRR8316905Silver flowering stage0.241
SRR8316906Gold flowering stage 0.720
SRR8316907Gold flowering stage 0.911
SRR8316908Gold flowering stage 0.940
SRP132670SRR6706286Control1.599
SRR6706287Light intensity 50%1.557
SRR6706288Light intensity 20%1.480
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.971
CNS0095593Slightly white alabastrum(diploid) 22.210
CNS0095594Slightly white alabastrum(diploid) 32.524
CNS0095595Whole white alabastrum(diploid) 22.156
CNS0095596Whole white alabastrum(diploid) 30.645
CNS0095597Whole white alabastrum(diploid) 41.282
CNS0095598Silvery flower (diploied) 17.812
CNS0095599Silvery flower (diploied) 24.113
CNS0095600Silvery flower (diploied) 33.057
CNS0095601Golden flower (diploid) 15.159
CNS0095602Golden flower (diploid) 23.838
CNS0095603Golden flower (diploid) 33.564
CNS0095604Slightly white alabastrum(tetraploid) 12.167
CNS0095605Slightly white alabastrum(tetraploid) 21.298
CNS0095606Slightly white alabastrum(tetraploid) 33.661
CNS0095607Whole white alabastrum(tetraploid) 12.566
CNS0095608Whole white alabastrum(tetraploid) 20.490
CNS0095609Whole white alabastrum(tetraploid) 31.239
CNS0095610Silvery flower (tetraploid) 10.957
CNS0095611Silvery flower (tetraploid) 21.830
CNS0095612Silvery flower (tetraploid) 31.018
CNS0095613Golden flower (tetraploid) 10.299
CNS0095614Golden flower (tetraploid) 20.898
CNS0095615Golden flower (tetraploid) 30.227
CRA001975CRR073297Stem 13.120
CRR073298Stem 22.545
CRR073299Stem 33.314
CRR073300Leaf 12.222
CRR073301Leaf 22.698
CRR073302Leaf 31.102
CRR073303Juvenile bud 12.568
CRR073304Juvenile bud 22.556
CRR073305Juvenile bud 32.016
CRR073306Third green 10.509
CRR073307Third green 20.407
CRR073308Third green 30.493
CRR073309Second white 10.331
CRR073310Second white 20.278
CRR073311Second white 30.067
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.023
CRR073314Silver flowering 30.122
CRR073315Gold flowering 14.222
CRR073316Gold flowering 23.745
CRR073317Gold flowering 32.188
CRR073318Tawny withering 12.473
CRR073319Tawny withering 22.753
CRR073320Tawny withering 34.409