Gene detail

Detail information of GWHGAAZE025419

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011097309.1	0	PREDICTED: uncharacterized protein LOC105176266 isoform X2 [Sesamum indicum]
trEMBL	tr\|U5FNY0\|U5FNY0_POPTR	0	Uncharacterized protein {ECO:0000313\|EMBL:ERP51047.1}
TAIR10	AT4G14605.1	1E-157	Mitochondrial transcription termination factor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	60945872	60947514	+
GWHAAZE00000007	mRNA	60945872	60947514	+
GWHAAZE00000007	exon	60945872	60945920	+
GWHAAZE00000007	exon	60946096	60946296	+
GWHAAZE00000007	exon	60946394	60947514	+
GWHAAZE00000007	CDS	60945872	60945920	+
GWHAAZE00000007	CDS	60946096	60946296	+
GWHAAZE00000007	CDS	60946394	60947514	+

Transcript Sequence
>GWHTAAZE025453 ACTCAAATTTGTTTCCCTCGGAAGCTCTTCTTTTGCCGATCAAAGCATGATGAATCATTCAGCTTAAGAGTGGTACCTCAAAATCTGATAGCTGCCGAAAAAGAAGAAGCCAAGGCTGTGCTAACCTTATTTTTGAGGAAACAAGGTTTGACCAATGCAGTAGCAGCAAGAACTATCAACAAGTCGGACCTTTTTATTGATCATCTTATCTCAAGGCTTCACTCTGTCCATAAATCTCGGTATCTTGTAGGGCGGGAACTTACAACCCTTGAGATTAGAGATGCTCTTAATCCTTACCTTGAAACCCTTTTCGAGGAGTATGGAGAATTTTTGGTTGATCTAGTGCAAAATTTTCCAACCCAACCTGTAAAAGAAAGCTCAGAGGAAAACTTTCAGAAAGAAACTGTTAAAGAAAGATCGGTTGCACCCATTTCGATCCCAACCACTACGCTTGACCCCAAGAAGCTAAAAGCATTGGGTCGAGTGAGTGATATTGTCCCTGCGGGTAAGCTTCCTCCACACATCACTTACCTTATAGAACTTGGGATGGAACTAGGCCTTATAAAGACAGTGATACGCAAGTTCCCCGCTTTTGCCTATTATAGTTTGGACGGGAAAATTAAACCGTTCATCGAGTTCCTTATTGATCTTGGAGTACCAAAATCGGAAATTCCCATCATCCTCAGCAAAAGGCCTCAACTTTGCGGAATCAGTCTGTCAGAAAACGTAATACCCACCATGAAATTTTTGGAAGGTTTAGGGGTGGACAAGAAACAGTGGGCAAAAGTGATTTACCGATTTCCAGCACTTTTGACTTATAGCAGGCTGAAGTTGACAACAACAGTTGACTTTCTCTATGAAATGGGTCTTTCAGCTGAAAGTGTGGGTAAGATCCTGACACGCTTCCCACACATTATAGGTTACAGTGTGGAAGAAAAGCTTCGTCCCACAGCTGAGTATTTCCGTTCTTTGGGGGTTGATGTGGCGGTTCTTCTAACCCGGTGTCCACAGACTTTTGGTCTAAGTGTTGAGACTCATTTGAAGCCGATGGCCGATTTTTTCTTGGAAAGGGGTTACAGTATGACAGATGTGGGGACTATGATTTCGAGATATGGGGCTTTGTGTACTTTTAGCTTGGCAAAGAATTTGATACCGAAGTGGGATTTCTTTTTGACCATGTGTTATCCGAAATCTGAGCTTGTTAAATTTCCTCAATATTTTGGTTATAGTTTGGAGGAAAGAATCAAACCTAGGTATGCGATTGTTGCAGAAAGTGGAGTAAGGTTACTATTGAATCAAATGCTTTCTCTTTCTGAAGACGAGTTTGATAAGGTTTTGAAAAAGAAGTTAAAGAAAATGGTCAGTGACTAA

Network for GWHGAAZE025419

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02536.15	mTERF	173	287	4.40E-17
PF02536.15	mTERF	278	442	2.40E-33

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	mTERF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003690	molecular_function	double-stranded DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.045
	SRR3591706	second leaf	16.721
	SRR3591707	mature leaf	29.272
	SRR3591708	Shoot apex	14.857
	SRR3591709	Stem	8.614
	SRR3591710	White floral bud	11.316
	SRR3591711	White flower	11.835
	SRR3591712	Green floral bud	10.306
	SRR3591713	Yellow flower	7.896
SRP173429	SRR8316895	Juvenile bud stage	6.252
	SRR8316896	Juvenile bud stage	6.253
	SRR8316897	Juvenile bud stage	3.835
	SRR8316894	Third green stage	3.236
	SRR8316900	Third green stage	10.367
	SRR8316901	Third green stage	8.626
	SRR8316898	Complete white stage	4.926
	SRR8316899	Complete white stage	15.805
	SRR8316903	Complete white stage	7.936
	SRR8316902	Silver flowering stage	4.696
	SRR8316904	Silver flowering stage	5.212
	SRR8316905	Silver flowering stage	2.912
	SRR8316906	Gold flowering stage	10.137
	SRR8316907	Gold flowering stage	9.381
	SRR8316908	Gold flowering stage	11.694
SRP132670	SRR6706286	Control	10.413
	SRR6706287	Light intensity 50%	9.220
	SRR6706288	Light intensity 20%	11.073
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.038
	CNS0095593	Slightly white alabastrum(diploid) 2	6.064
	CNS0095594	Slightly white alabastrum(diploid) 3	4.815
	CNS0095595	Whole white alabastrum(diploid) 2	6.127
	CNS0095596	Whole white alabastrum(diploid) 3	5.023
	CNS0095597	Whole white alabastrum(diploid) 4	4.224
	CNS0095598	Silvery flower (diploied) 1	11.440
	CNS0095599	Silvery flower (diploied) 2	6.166
	CNS0095600	Silvery flower (diploied) 3	13.179
	CNS0095601	Golden flower (diploid) 1	9.506
	CNS0095602	Golden flower (diploid) 2	14.486
	CNS0095603	Golden flower (diploid) 3	14.709
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.730
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.110
	CNS0095606	Slightly white alabastrum(tetraploid) 3	16.659
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.741
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.657
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.520
	CNS0095610	Silvery flower (tetraploid) 1	13.532
	CNS0095611	Silvery flower (tetraploid) 2	15.708
	CNS0095612	Silvery flower (tetraploid) 3	6.271
	CNS0095613	Golden flower (tetraploid) 1	7.719
	CNS0095614	Golden flower (tetraploid) 2	12.030
	CNS0095615	Golden flower (tetraploid) 3	16.353
CRA001975	CRR073297	Stem 1	8.680
	CRR073298	Stem 2	8.194
	CRR073299	Stem 3	6.708
	CRR073300	Leaf 1	6.906
	CRR073301	Leaf 2	6.776
	CRR073302	Leaf 3	5.099
	CRR073303	Juvenile bud 1	8.223
	CRR073304	Juvenile bud 2	5.121
	CRR073305	Juvenile bud 3	6.321
	CRR073306	Third green 1	2.083
	CRR073307	Third green 2	2.091
	CRR073308	Third green 3	2.235
	CRR073309	Second white 1	3.682
	CRR073310	Second white 2	3.105
	CRR073311	Second white 3	2.468
	CRR073312	Silver flowering 1	1.357
	CRR073313	Silver flowering 2	1.378
	CRR073314	Silver flowering 3	0.970
	CRR073315	Gold flowering 1	14.250
	CRR073316	Gold flowering 2	16.915
	CRR073317	Gold flowering 3	13.839
	CRR073318	Tawny withering 1	4.630
	CRR073319	Tawny withering 2	3.572
	CRR073320	Tawny withering 3	6.007