Gene detail

Detail information of GWHGAAZE025423

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002270017.1	9.71643E-63	PREDICTED: uncharacterized protein LOC100265298 isoform X2 [Vitis vinifera]
trEMBL	tr\|D7SVP7\|D7SVP7_VITVI	4E-63	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI21346.3}
TAIR10	AT3G27050.1	6E-32	Without detailed annotation

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	60988362	60990386	+
GWHAAZE00000007	mRNA	60988362	60990386	+
GWHAAZE00000007	exon	60988362	60988925	+
GWHAAZE00000007	exon	60989474	60989558	+
GWHAAZE00000007	exon	60989629	60989694	+
GWHAAZE00000007	exon	60990273	60990386	+
GWHAAZE00000007	five_prime_UTR	60988362	60988767	+
GWHAAZE00000007	CDS	60988768	60988925	+
GWHAAZE00000007	CDS	60989474	60989558	+
GWHAAZE00000007	CDS	60989629	60989694	+
GWHAAZE00000007	CDS	60990273	60990386	+

Transcript Sequence
>GWHTAAZE025457 AGGGTTTAATGCAACTTGACTTGGATTGAAGGACATAGAAGGAACACTATTTATTGGATGATGTATAAGAAAAGAAAATCTGGAAGCTTGTCCTTTTTGTTGAGAAATTTATTAATTTTGTCTTCTTGTTATATTTGAAAGGAAAAAGGCTTCAATCTTGGCTTTGCTGATAAATTATCAGATGATTTTCTATAATATCCAGGTCGTGCTTAGTTCAACCTAAATATATTGAGAACTAATACTGATTGTATCTTTTAATGTTCTCCATATCCATGTGCAAAGCCATACTTTTTTTGGATACTTTAGATTCTAGTACAATCTTAAACGTTAACTCCAGACAACGAATCAGACAACACAGGATGATGATCCAAGTAGTATAATTTTTAGCTTGATCTTAGCCAGGTAAATGCATTACTTATATCATAAGATAATGAGATGGCCTGGCATAACTTTTCCCTTCACTATTACAGATCCAAGGTTTGGTCTAGCTTGCTTGGGAAAAGTTAACATGGCCTATGAAAATAATCAGGATTTGATGATTCGCTTCTATGAGTTTGTTGCAAATGAAGAGATGGCATGTGAGGAAGCCGAGCTTGGACCGGACAAATTTGCAGAAAAAACAGAAATGCAAAAGAAATTACAGGAGCAGCAACTAGAGATGCTAAAGCATATGCGTAACTTTCACGTGGATGATCAGTCTGCAATCCTTGAGAAGTTGCGACAACAAATGGAGGAAGCCAATTTTGATAGTGAAGCATCATTTTTATCAGTTGAACAGATCCAGGACCTTGTTAGGAGAAGGGTATCCCCTGTATTTAAGCCAAGTTAG

Network for GWHGAAZE025423

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0035

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	27.947
	SRR3591706	second leaf	29.719
	SRR3591707	mature leaf	50.777
	SRR3591708	Shoot apex	36.811
	SRR3591709	Stem	52.493
	SRR3591710	White floral bud	20.680
	SRR3591711	White flower	23.737
	SRR3591712	Green floral bud	25.081
	SRR3591713	Yellow flower	19.899
SRP173429	SRR8316895	Juvenile bud stage	23.110
	SRR8316896	Juvenile bud stage	30.305
	SRR8316897	Juvenile bud stage	12.900
	SRR8316894	Third green stage	12.644
	SRR8316900	Third green stage	35.259
	SRR8316901	Third green stage	34.719
	SRR8316898	Complete white stage	11.366
	SRR8316899	Complete white stage	49.088
	SRR8316903	Complete white stage	15.888
	SRR8316902	Silver flowering stage	8.242
	SRR8316904	Silver flowering stage	11.513
	SRR8316905	Silver flowering stage	4.449
	SRR8316906	Gold flowering stage	18.015
	SRR8316907	Gold flowering stage	15.936
	SRR8316908	Gold flowering stage	15.236
SRP132670	SRR6706286	Control	15.871
	SRR6706287	Light intensity 50%	17.161
	SRR6706288	Light intensity 20%	17.536
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	45.923
	CNS0095593	Slightly white alabastrum(diploid) 2	50.327
	CNS0095594	Slightly white alabastrum(diploid) 3	46.806
	CNS0095595	Whole white alabastrum(diploid) 2	41.221
	CNS0095596	Whole white alabastrum(diploid) 3	40.763
	CNS0095597	Whole white alabastrum(diploid) 4	38.354
	CNS0095598	Silvery flower (diploied) 1	43.319
	CNS0095599	Silvery flower (diploied) 2	43.107
	CNS0095600	Silvery flower (diploied) 3	27.832
	CNS0095601	Golden flower (diploid) 1	46.548
	CNS0095602	Golden flower (diploid) 2	30.967
	CNS0095603	Golden flower (diploid) 3	28.364
	CNS0095604	Slightly white alabastrum(tetraploid) 1	37.513
	CNS0095605	Slightly white alabastrum(tetraploid) 2	36.939
	CNS0095606	Slightly white alabastrum(tetraploid) 3	43.993
	CNS0095607	Whole white alabastrum(tetraploid) 1	26.045
	CNS0095608	Whole white alabastrum(tetraploid) 2	29.142
	CNS0095609	Whole white alabastrum(tetraploid) 3	33.358
	CNS0095610	Silvery flower (tetraploid) 1	30.482
	CNS0095611	Silvery flower (tetraploid) 2	31.190
	CNS0095612	Silvery flower (tetraploid) 3	27.539
	CNS0095613	Golden flower (tetraploid) 1	30.754
	CNS0095614	Golden flower (tetraploid) 2	26.582
	CNS0095615	Golden flower (tetraploid) 3	13.885
CRA001975	CRR073297	Stem 1	22.678
	CRR073298	Stem 2	19.351
	CRR073299	Stem 3	15.140
	CRR073300	Leaf 1	15.152
	CRR073301	Leaf 2	12.725
	CRR073302	Leaf 3	17.878
	CRR073303	Juvenile bud 1	15.796
	CRR073304	Juvenile bud 2	10.838
	CRR073305	Juvenile bud 3	12.185
	CRR073306	Third green 1	1.493
	CRR073307	Third green 2	4.010
	CRR073308	Third green 3	2.367
	CRR073309	Second white 1	7.417
	CRR073310	Second white 2	6.718
	CRR073311	Second white 3	2.545
	CRR073312	Silver flowering 1	4.116
	CRR073313	Silver flowering 2	2.297
	CRR073314	Silver flowering 3	2.928
	CRR073315	Gold flowering 1	21.025
	CRR073316	Gold flowering 2	30.905
	CRR073317	Gold flowering 3	15.319
	CRR073318	Tawny withering 1	18.212
	CRR073319	Tawny withering 2	16.533
	CRR073320	Tawny withering 3	22.877