Detail information of GWHGAAZE025432


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010660729.12.913E-123PREDICTED: transcription factor TCP20 [Vitis vinifera]
Swissprottr|Q9LSD5|TCP20_ARATH3E-80Transcription factor TCP20
trEMBLtr|F6H463|F6H463_VITVI1E-123Putative uncharacterized protein {ECO:0000313|EMBL:CCB47006.1}
TAIR10AT3G27010.11E-60TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene6116591661166782+
GWHAAZE00000007mRNA6116591661166782+
GWHAAZE00000007exon6116591661166423+
GWHAAZE00000007exon6116647861166782+
GWHAAZE00000007CDS6116591661166423+
GWHAAZE00000007CDS6116647861166782+
Transcript Sequence

Network for GWHGAAZE025432

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03634.14TCP601458.30E-31
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyTCP

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf9.928
SRR3591706second leaf31.139
SRR3591707mature leaf39.657
SRR3591708Shoot apex19.021
SRR3591709Stem28.181
SRR3591710White floral bud14.710
SRR3591711White flower30.264
SRR3591712Green floral bud14.574
SRR3591713Yellow flower23.929
SRP173429 SRR8316895Juvenile bud stage 8.404
SRR8316896Juvenile bud stage 8.116
SRR8316897Juvenile bud stage 3.823
SRR8316894Third green stage 4.431
SRR8316900Third green stage 13.581
SRR8316901Third green stage 13.395
SRR8316898Complete white stage 6.935
SRR8316899Complete white stage 27.659
SRR8316903Complete white stage 9.344
SRR8316902Silver flowering stage6.727
SRR8316904Silver flowering stage10.329
SRR8316905Silver flowering stage5.630
SRR8316906Gold flowering stage 22.238
SRR8316907Gold flowering stage 20.945
SRR8316908Gold flowering stage 24.447
SRP132670SRR6706286Control21.900
SRR6706287Light intensity 50%18.071
SRR6706288Light intensity 20%20.549
CNP0000432CNS0095592Slightly white alabastrum(diploid) 114.816
CNS0095593Slightly white alabastrum(diploid) 211.696
CNS0095594Slightly white alabastrum(diploid) 310.291
CNS0095595Whole white alabastrum(diploid) 210.263
CNS0095596Whole white alabastrum(diploid) 39.403
CNS0095597Whole white alabastrum(diploid) 411.588
CNS0095598Silvery flower (diploied) 128.950
CNS0095599Silvery flower (diploied) 221.568
CNS0095600Silvery flower (diploied) 324.453
CNS0095601Golden flower (diploid) 134.820
CNS0095602Golden flower (diploid) 233.149
CNS0095603Golden flower (diploid) 332.248
CNS0095604Slightly white alabastrum(tetraploid) 111.402
CNS0095605Slightly white alabastrum(tetraploid) 29.923
CNS0095606Slightly white alabastrum(tetraploid) 320.770
CNS0095607Whole white alabastrum(tetraploid) 114.494
CNS0095608Whole white alabastrum(tetraploid) 26.466
CNS0095609Whole white alabastrum(tetraploid) 310.841
CNS0095610Silvery flower (tetraploid) 139.445
CNS0095611Silvery flower (tetraploid) 252.314
CNS0095612Silvery flower (tetraploid) 314.656
CNS0095613Golden flower (tetraploid) 122.957
CNS0095614Golden flower (tetraploid) 236.267
CNS0095615Golden flower (tetraploid) 325.529
CRA001975CRR073297Stem 110.776
CRR073298Stem 211.860
CRR073299Stem 312.263
CRR073300Leaf 111.554
CRR073301Leaf 210.529
CRR073302Leaf 38.145
CRR073303Juvenile bud 113.078
CRR073304Juvenile bud 27.370
CRR073305Juvenile bud 312.419
CRR073306Third green 14.035
CRR073307Third green 23.743
CRR073308Third green 34.524
CRR073309Second white 16.384
CRR073310Second white 27.665
CRR073311Second white 35.764
CRR073312Silver flowering 15.582
CRR073313Silver flowering 22.868
CRR073314Silver flowering 35.636
CRR073315Gold flowering 19.773
CRR073316Gold flowering 29.434
CRR073317Gold flowering 35.507
CRR073318Tawny withering 118.623
CRR073319Tawny withering 210.205
CRR073320Tawny withering 311.516