Gene detail

Detail information of GWHGAAZE025437

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KHG19415.1	4.1839E-172	60S ribosomal L7a [Gossypium arboreum]
COG	YP_001541653.1	1E-11	50S ribosomal protein L7Ae
Swissprot	tr\|Q9LZH9\|RL7A2_ARATH	2E-168	60S ribosomal protein L7a-2
trEMBL	tr\|A0A061FZQ6\|A0A061FZQ6_THECC	8E-170	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein {ECO:0000313\|EMBL:EOY22553.1}
TAIR10	AT2G47610.1	4E-103	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	61205163	61208615	-
GWHAAZE00000007	mRNA	61205163	61208615	-
GWHAAZE00000007	exon	61205163	61205294	-
GWHAAZE00000007	exon	61205388	61205480	-
GWHAAZE00000007	exon	61205983	61206111	-
GWHAAZE00000007	exon	61206205	61206374	-
GWHAAZE00000007	exon	61207579	61207780	-
GWHAAZE00000007	exon	61208365	61208409	-
GWHAAZE00000007	exon	61208613	61208615	-
GWHAAZE00000007	CDS	61208613	61208615	-
GWHAAZE00000007	CDS	61208365	61208409	-
GWHAAZE00000007	CDS	61207579	61207780	-
GWHAAZE00000007	CDS	61206205	61206374	-
GWHAAZE00000007	CDS	61205983	61206111	-
GWHAAZE00000007	CDS	61205388	61205480	-
GWHAAZE00000007	CDS	61205163	61205294	-

Transcript Sequence
>GWHTAAZE025471 ATGGCTCCGAAGAAAGGTGTTAAGGTTGCTCCAGCTAAGAAGAAACCGGAGAAGGTGGTAAATCCATTGTTCGAGAAACGTACAAAGCAATTTGGGATTGGAGGTGCTTTGCCGCCAAAGAAGGATCTGCATAGGTTCGTGAAATGGCCGCAGGTTGTTCGTATTCAGAGGAAGAGAAGGATTCTCAAGCAGAGGTTGAAGGTACCACCAGCTTTGAACCAGTTCACCAAGACGCTAGACAAGAATCTTGCAACAAGTTTGTTCAAGATGCTTCTCAAGTATAGGCCTGAGGACAAAGCAGCCAAGAAGGAGCGCCTGCTGAAAAGGGCGCAAGCTGAGGCTGAAGGAAAGGCTCCTGAGGCTAAGAAGCCTATTGTTGTGAAGTATGGTCTCAACCACGTAACCTACCTTATAGAGCAGAACAAAGCGCAGTTGGTAGTGATTGCTCATGACGTCGACCCAATAGAGTTGGTTGTTTGGCTTCCAGCATTGTGCAGGAAAATGGAAATCCCTTACTGCATTGTTAAGGGAAAAGCACGATTGGGAGCGATCGTCCACAAGAAGACTGCATCAGTTTTGTGCTTGACCACTGTTAAGAATGAAGATAAGATGGATTTCAGCAGAATCTTGGAGGCTATCAAGGCCAACTTCAACGACAAGTATGAAGAATACAGAAAGAAGTGGGGCGGCGGAATCATGGGTTCAAAGTCCCAAGCGAAAACAAAGGCCAAGGAGAGGGTTCTCGCCAAGGAAGCTGCCCAGAGGATGAACTAA

Network for GWHGAAZE025437

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01248.27	Ribosomal_L7Ae	114	205	2.10E-26

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02936	RP-L7Ae, RPL7A	Ribosome	map03010

Gene Ontology

GO term	Ontology	Name
GO:0042254	biological_process	ribosome biogenesis
GO:1990904	cellular_component	ribonucleoprotein complex

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	519.792
	SRR3591706	second leaf	211.118
	SRR3591707	mature leaf	93.032
	SRR3591708	Shoot apex	650.188
	SRR3591709	Stem	240.793
	SRR3591710	White floral bud	183.060
	SRR3591711	White flower	233.094
	SRR3591712	Green floral bud	380.957
	SRR3591713	Yellow flower	139.912
SRP173429	SRR8316895	Juvenile bud stage	198.987
	SRR8316896	Juvenile bud stage	282.569
	SRR8316897	Juvenile bud stage	175.692
	SRR8316894	Third green stage	132.433
	SRR8316900	Third green stage	384.676
	SRR8316901	Third green stage	352.922
	SRR8316898	Complete white stage	61.444
	SRR8316899	Complete white stage	288.828
	SRR8316903	Complete white stage	99.995
	SRR8316902	Silver flowering stage	58.958
	SRR8316904	Silver flowering stage	63.254
	SRR8316905	Silver flowering stage	31.232
	SRR8316906	Gold flowering stage	98.942
	SRR8316907	Gold flowering stage	95.194
	SRR8316908	Gold flowering stage	140.010
SRP132670	SRR6706286	Control	448.169
	SRR6706287	Light intensity 50%	448.349
	SRR6706288	Light intensity 20%	486.451
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	305.567
	CNS0095593	Slightly white alabastrum(diploid) 2	353.855
	CNS0095594	Slightly white alabastrum(diploid) 3	268.294
	CNS0095595	Whole white alabastrum(diploid) 2	244.766
	CNS0095596	Whole white alabastrum(diploid) 3	304.615
	CNS0095597	Whole white alabastrum(diploid) 4	191.128
	CNS0095598	Silvery flower (diploied) 1	162.444
	CNS0095599	Silvery flower (diploied) 2	158.832
	CNS0095600	Silvery flower (diploied) 3	110.727
	CNS0095601	Golden flower (diploid) 1	114.408
	CNS0095602	Golden flower (diploid) 2	100.015
	CNS0095603	Golden flower (diploid) 3	102.514
	CNS0095604	Slightly white alabastrum(tetraploid) 1	314.436
	CNS0095605	Slightly white alabastrum(tetraploid) 2	305.290
	CNS0095606	Slightly white alabastrum(tetraploid) 3	391.115
	CNS0095607	Whole white alabastrum(tetraploid) 1	177.832
	CNS0095608	Whole white alabastrum(tetraploid) 2	140.462
	CNS0095609	Whole white alabastrum(tetraploid) 3	302.441
	CNS0095610	Silvery flower (tetraploid) 1	112.091
	CNS0095611	Silvery flower (tetraploid) 2	100.130
	CNS0095612	Silvery flower (tetraploid) 3	71.396
	CNS0095613	Golden flower (tetraploid) 1	53.124
	CNS0095614	Golden flower (tetraploid) 2	89.694
	CNS0095615	Golden flower (tetraploid) 3	41.289
CRA001975	CRR073297	Stem 1	494.897
	CRR073298	Stem 2	478.420
	CRR073299	Stem 3	532.184
	CRR073300	Leaf 1	480.238
	CRR073301	Leaf 2	501.688
	CRR073302	Leaf 3	603.464
	CRR073303	Juvenile bud 1	478.977
	CRR073304	Juvenile bud 2	361.137
	CRR073305	Juvenile bud 3	438.602
	CRR073306	Third green 1	63.519
	CRR073307	Third green 2	67.372
	CRR073308	Third green 3	83.126
	CRR073309	Second white 1	70.427
	CRR073310	Second white 2	62.933
	CRR073311	Second white 3	39.713
	CRR073312	Silver flowering 1	62.786
	CRR073313	Silver flowering 2	97.096
	CRR073314	Silver flowering 3	62.791
	CRR073315	Gold flowering 1	165.737
	CRR073316	Gold flowering 2	191.651
	CRR073317	Gold flowering 3	165.852
	CRR073318	Tawny withering 1	496.589
	CRR073319	Tawny withering 2	410.331
	CRR073320	Tawny withering 3	508.354