Gene detail

Detail information of GWHGAAZE025461

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_011098945.1	PREDICTED: protein AUXIN SIGNALING F-BOX 2 [Sesamum indicum]
Swissprot	tr\|Q9LPW7\|AFB3_ARATH	Protein AUXIN SIGNALING F-BOX 3
trEMBL	tr\|A0A022QVC6\|A0A022QVC6_ERYGU	Uncharacterized protein {ECO:0000313\|EMBL:EYU31866.1}
TAIR10	AT3G26810.1	auxin signaling F-box 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	61514477	61517154	-
GWHAAZE00000007	mRNA	61514477	61517154	-
GWHAAZE00000007	exon	61514477	61515247	-
GWHAAZE00000007	exon	61515339	61515834	-
GWHAAZE00000007	exon	61516700	61517154	-
GWHAAZE00000007	CDS	61516700	61517154	-
GWHAAZE00000007	CDS	61515339	61515834	-
GWHAAZE00000007	CDS	61514477	61515247	-

Transcript Sequence
>GWHTAAZE025495 ATGATGAATTACTTCCCTGAAGAGGTTTTAGAACACGTATTTGATTTCTTAACTTCACATAAAGACCGAAATGCTGTGTCCCTGGTTTGCAAATCGTGGTACAGAGTGGAGACATTTAGCAGGGAGAGGGTGTTTATAGGGAACTGTTATGCAATATGTCCAGAGAGGTTGATTGCGAGGTTTCCTAGGGTTAGGTCACTGATTTTGAAAGGAAAGCCTCATTTTGCGGATTTCAATCTGGTTCCTCCTGATTGGGGTGGCTTTGTGTTTCCATGGATTGAGGCCATGGCAAAGGGTGGAGTGAATCTGGAGGAGCTAAGATTGAAGAGGATGGTCGTTTCAGATGAAAGCCTCGAGCTTCTATCTCGGTCTTTCCCTAATTTCAAGTCTTTGGTCTTAGTTAGCTGTGAAGGATTCACGACTGACGGCCTTGCAGCCATAGCTTCCAATTGCAGGTTTCTTAGGGAGCTGGACTTGCAAGAAAATGAAGTAGAGGATCGCAGAGGGAATTGGCTGAGCTGCTTTCCTGACAGCTCAACTTCACTTGTTTCCCTGAACTTTGCATGCCTCAAAGGGGAAGTTAATTTGGCATCTCTTGAGAGACTGGTGGGGAGATCCCGTAATCTGAGAAGTCTGAGGCTAAACCATGCAGTGCCCCTCGATGCTCTTCACAAGATTCTAGTGCAAGCTCCTCAGTTGGTGGAGTTGGGGACCGGATCTTATGTCCATGATCCAGAGTCAGAGACCTACACTAAACTAAAAAATGTCATCCAGAAATATTCATCAATCAGGAGCTTGTCGGGATTCTTGGAGGTTGCTCCTCGCTGCTTGCCTGCACTTTACCCGATTTGTTCAAACTTAACTTCCATGAATTTGAGCTATGCTCCAGGGATCATCAGTAGTGAGCTCACAAAACTAATTCGTCACTGCCAGAAACTACAAAAACTATGGATTTTGGACTGCATCGGAGATAAAGGGCTGGCTGTGGTGGCTTCCACTTGCAAAGAACTGCAAGAACTGAGAGTTTTTCCATCTGATCTATATGGCGTTGGTAATGCTGCAGTCACTGAAGAAGGCCTGGTGTCTATATCGGCTGGTTGCCCTAAACTCAATTCACTGCTCTACTTCTGCAAACAGATGACAAATGCCGCACTCATAACTGTGGCCAAAAATTGTCCCAATTTTATTCGCTTCAGACTCTGTACTCTTGACCCCACTATACCAGACCCGGTGACCCAGCAGCCACTGGACGAAGGTTTTGGGGCTATTGTTCAATCATGCAAGGGTCTAAAGCGCTTGTCTCTCTCTGGCCTTTTGACCGACCAAGTTTTCCTCTACATAGGAATGTATGCTGAGCAGCTCGAAATGCTGTCGGTCGCTTTTGCAGGTGACAGTGACAAGGGAATGCTGTATGTGTTGAATGGGTGCAAAAAGCTTAAGAAGCTAGAGATTAGGGATAGCCCTTTTGGTAATTTGGCACTTCTGGAGGACGTGGGGAAGTATGAAACAATGCGATCCCTTTGGATGTCGTCCTGCGAAGTTACCCTTGGAGCCTGCAAGGCACTTGCAAAGAAGATGCCAAGTCTTAATGTGGAGGTTATTGACGAGAGCAATCAGATGGAGTCTAACCCTGACGATAGGCAGAAAGTAGAGAAGATGTACTTGTACCGAACGTTGGTGGGGCCCAGGAGCGATGCACCCGAGTTCGTTTGGACTTTGTAG

Network for GWHGAAZE025461

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF18511.2	F-box_5	3	42	4.70E-20
PF18791.2	Transp_inhibit	62	108	3.30E-23

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	112.317
	SRR3591706	second leaf	91.961
	SRR3591707	mature leaf	112.139
	SRR3591708	Shoot apex	122.358
	SRR3591709	Stem	110.471
	SRR3591710	White floral bud	126.988
	SRR3591711	White flower	151.712
	SRR3591712	Green floral bud	107.829
	SRR3591713	Yellow flower	150.065
SRP173429	SRR8316895	Juvenile bud stage	40.531
	SRR8316896	Juvenile bud stage	46.511
	SRR8316897	Juvenile bud stage	20.633
	SRR8316894	Third green stage	24.370
	SRR8316900	Third green stage	75.194
	SRR8316901	Third green stage	67.021
	SRR8316898	Complete white stage	49.680
	SRR8316899	Complete white stage	131.867
	SRR8316903	Complete white stage	74.888
	SRR8316902	Silver flowering stage	44.933
	SRR8316904	Silver flowering stage	59.046
	SRR8316905	Silver flowering stage	31.825
	SRR8316906	Gold flowering stage	108.978
	SRR8316907	Gold flowering stage	102.478
	SRR8316908	Gold flowering stage	107.122
SRP132670	SRR6706286	Control	75.630
	SRR6706287	Light intensity 50%	71.406
	SRR6706288	Light intensity 20%	75.893
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	57.293
	CNS0095593	Slightly white alabastrum(diploid) 2	61.510
	CNS0095594	Slightly white alabastrum(diploid) 3	42.033
	CNS0095595	Whole white alabastrum(diploid) 2	51.034
	CNS0095596	Whole white alabastrum(diploid) 3	42.040
	CNS0095597	Whole white alabastrum(diploid) 4	46.341
	CNS0095598	Silvery flower (diploied) 1	103.781
	CNS0095599	Silvery flower (diploied) 2	79.562
	CNS0095600	Silvery flower (diploied) 3	137.135
	CNS0095601	Golden flower (diploid) 1	98.485
	CNS0095602	Golden flower (diploid) 2	152.741
	CNS0095603	Golden flower (diploid) 3	145.937
	CNS0095604	Slightly white alabastrum(tetraploid) 1	62.431
	CNS0095605	Slightly white alabastrum(tetraploid) 2	52.558
	CNS0095606	Slightly white alabastrum(tetraploid) 3	107.465
	CNS0095607	Whole white alabastrum(tetraploid) 1	39.691
	CNS0095608	Whole white alabastrum(tetraploid) 2	32.215
	CNS0095609	Whole white alabastrum(tetraploid) 3	72.723
	CNS0095610	Silvery flower (tetraploid) 1	112.539
	CNS0095611	Silvery flower (tetraploid) 2	118.129
	CNS0095612	Silvery flower (tetraploid) 3	90.691
	CNS0095613	Golden flower (tetraploid) 1	74.370
	CNS0095614	Golden flower (tetraploid) 2	116.074
	CNS0095615	Golden flower (tetraploid) 3	145.743
CRA001975	CRR073297	Stem 1	103.479
	CRR073298	Stem 2	100.708
	CRR073299	Stem 3	109.019
	CRR073300	Leaf 1	127.954
	CRR073301	Leaf 2	126.062
	CRR073302	Leaf 3	116.635
	CRR073303	Juvenile bud 1	113.881
	CRR073304	Juvenile bud 2	108.062
	CRR073305	Juvenile bud 3	150.024
	CRR073306	Third green 1	103.612
	CRR073307	Third green 2	81.756
	CRR073308	Third green 3	87.670
	CRR073309	Second white 1	69.179
	CRR073310	Second white 2	54.101
	CRR073311	Second white 3	53.312
	CRR073312	Silver flowering 1	55.351
	CRR073313	Silver flowering 2	44.839
	CRR073314	Silver flowering 3	36.749
	CRR073315	Gold flowering 1	155.759
	CRR073316	Gold flowering 2	179.547
	CRR073317	Gold flowering 3	141.072
	CRR073318	Tawny withering 1	137.653
	CRR073319	Tawny withering 2	105.875
	CRR073320	Tawny withering 3	109.207