Gene detail

Detail information of GWHGAAZE025467

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_006468893.1	PREDICTED: lysosomal alpha-mannosidase-like isoform X1 [Citrus sinensis]
Swissprot	tr\|C0HJB3\|MANA_CANEN	Alpha-mannosidase, light subunit {ECO:0000303\|PubMed:24221485}
trEMBL	tr\|M5WR08\|M5WR08_PRUPE	Alpha-mannosidase {ECO:0000256\|RuleBase:RU361199}
TAIR10	AT3G26720.1	Glycosyl hydrolase family 38 protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	61671082	61683113	-
GWHAAZE00000007	mRNA	61671082	61683113	-
GWHAAZE00000007	exon	61682982	61683113	-
GWHAAZE00000007	exon	61682745	61682833	-
GWHAAZE00000007	exon	61682257	61682431	-
GWHAAZE00000007	exon	61681908	61682027	-
GWHAAZE00000007	exon	61681646	61681729	-
GWHAAZE00000007	exon	61681497	61681568	-
GWHAAZE00000007	exon	61680913	61681026	-
GWHAAZE00000007	exon	61680657	61680757	-
GWHAAZE00000007	exon	61680477	61680570	-
GWHAAZE00000007	exon	61680221	61680388	-
GWHAAZE00000007	exon	61679929	61680012	-
GWHAAZE00000007	exon	61678547	61678612	-
GWHAAZE00000007	exon	61678409	61678465	-
GWHAAZE00000007	exon	61676647	61676866	-
GWHAAZE00000007	exon	61676392	61676531	-
GWHAAZE00000007	exon	61675537	61675605	-
GWHAAZE00000007	exon	61675315	61675374	-
GWHAAZE00000007	exon	61675127	61675198	-
GWHAAZE00000007	exon	61674247	61674294	-
GWHAAZE00000007	exon	61674035	61674154	-
GWHAAZE00000007	exon	61673794	61673859	-
GWHAAZE00000007	exon	61673258	61673370	-
GWHAAZE00000007	exon	61673017	61673101	-
GWHAAZE00000007	exon	61672500	61672610	-
GWHAAZE00000007	exon	61672328	61672423	-
GWHAAZE00000007	exon	61671963	61672010	-
GWHAAZE00000007	exon	61671608	61671676	-
GWHAAZE00000007	exon	61671082	61671520	-
GWHAAZE00000007	CDS	61682982	61683113	-
GWHAAZE00000007	CDS	61682745	61682833	-
GWHAAZE00000007	CDS	61682257	61682431	-
GWHAAZE00000007	CDS	61681908	61682027	-
GWHAAZE00000007	CDS	61681646	61681729	-
GWHAAZE00000007	CDS	61681497	61681568	-
GWHAAZE00000007	CDS	61680913	61681026	-
GWHAAZE00000007	CDS	61680657	61680757	-
GWHAAZE00000007	CDS	61680477	61680570	-
GWHAAZE00000007	CDS	61680221	61680388	-
GWHAAZE00000007	CDS	61679929	61680012	-
GWHAAZE00000007	CDS	61678547	61678612	-
GWHAAZE00000007	CDS	61678409	61678465	-
GWHAAZE00000007	CDS	61676647	61676866	-
GWHAAZE00000007	CDS	61676392	61676531	-
GWHAAZE00000007	CDS	61675537	61675605	-
GWHAAZE00000007	CDS	61675315	61675374	-
GWHAAZE00000007	CDS	61675127	61675198	-
GWHAAZE00000007	CDS	61674247	61674294	-
GWHAAZE00000007	CDS	61674035	61674154	-
GWHAAZE00000007	CDS	61673794	61673859	-
GWHAAZE00000007	CDS	61673258	61673370	-
GWHAAZE00000007	CDS	61673017	61673101	-
GWHAAZE00000007	CDS	61672500	61672610	-
GWHAAZE00000007	CDS	61672328	61672423	-
GWHAAZE00000007	CDS	61671963	61672010	-
GWHAAZE00000007	CDS	61671608	61671676	-
GWHAAZE00000007	CDS	61671305	61671520	-
GWHAAZE00000007	three_prime_UTR	61671082	61671304	-

Transcript Sequence
>GWHTAAZE025501 ATGTTTGGTTGTTACTTTGTTGTACAGGGAGCTTGTGTTCAGAACATATTGGATTCAGTAATATCAGCATTGTTGGATGACAAGAATCGGAAGTTCATCTATGTTGAAATGGCTAGACTTCTATTCCTTTTTGCCTTCTTCCAGCGATGGTGGAGTCAGCAGAGTCCGCTACTTCAGACAAAAGTCAAGGAGCTTGTCAATTCTGGTCAACTAGAGTTCATAAATGGGGGTATGTGCATGCACGATGAAGCAACCCCGCATTACATTGATCTGATTGATCAGACAACTTTGGGACATCAGTTTATCAAGTTTGAGTTTGGTCAGAAACCTAGAGTTGGATGGCAGATCGATCCTTTTGGACATTCTGCTGTTCAAGCTTACTTGCTAGGTGCAGAGTTAGGATTCGACTCTCTCTTCTTCGCTAGACTTGATTACCAAGATAGAGCCAAGCGAAAAGATGAAAAGACTCTCGAGGTTGTGTGGCAGGGTTCTAAGTCCCTTGGTTCATCTTCACAGATATTTACCGGTATATTTCCCAAGCATTATGACCCCCCTGATGGTTTCACATTTGAAATAAATGATGTGTCTCCACCTATTCAGGATGACGTTCTCCTGTTTGACTATAATGTTGAAGAGCGCGTCAATGATTTTGTTGCTGCTGCCCTGGCGCAAGCTAACGTTACCAGGACAAACCATATAATGTGGTGTATGGGTACAGATTTTCGGTATCAATATGCACTTACATGGTTCAGACAAATGGACAAGTTTATCCATTATGTAAACATGGATGGTCGCGTCAATGCACTATATTCAACCCCATCCATTTACACTGATGCAAAATATGCAGCAGATGAAATATGGCCTCTCAAAACTGGCGACTTCTTCCCGTATGCAGACCATGAAAATGCATATTGGACAGGTTACTTCACAAGTAGGCCAGCCTTAAAAGGTTATGTCAGAACAATGAGTGGGTACTATCTGGCAGCAAGGCAATTGGAATTCTTTAAGGGAAGGAGTAGTTCAGGGGCAAACACAGATGCATTGGGTGATGCTTTAGCAATCGCTCAACATCATGATGCAGTTAGTGGTACAGAAAGGCAGCATGTGGCTGCTGACTACGCAAAGCGAATTTCAATGGGCTACGCACAAGCTGAGGAGGTAGTTGCATCATCACTGGCCTTGTTGACACATTCAAGTACTAGCCATGAGAGTTCTGGCTCCAAATTTCAGCAGTGTCCTCTTCTCAATATAAGTTACTGTCCTCCATCAGAAGCTGCATTGTCAAACGGGAAAAGCTTGGTTGTAGTTGTCTACAATCCTCTAGGATGGAAGAGAGAGGAAGTAGTTCGAATTCCTGTTTCATCTGAGGGAATAGTAGTTCTGGATTCTGGTGGAAGAGAAATTGAATCACAGCTTCTTCCTCTAGCCAATGCCTATTTGAGCACAAGAAACTATCATGTCAGAGCATATTTGGGTAGATCCCCTAGTGCCACACCTAAATATTCGCTTGCCTTTACAGCATCTGTACCACCTCTTGGTTTCAGCACTTATGTTGTCTCAACTGGGAATCAAACAGGTGGCAGTTCAACTATGTCGACAGTTTACACGTCTCAAAGAAGTGTGGATAATACTGTAGAAATTGGTCAAGGAAATCTGAGGTTACATTATACTGCAGATGAAGGAAAGCTTATGCGTTACTTTAATATAAGAAATTCGGTTACTGCATCTGCTGAACAATCATACAGTTATTATTCTGGATATAATGGTACTGATAAAGATTCTCAGGCATCTGGGGCATATATCTTCCGCCCGAATGGTACATATCCAATAAAGTATGAAGGCCAGGTTCCCCTAACTGTTATGAGTGGTCCAATAATGGATGAAGTACATCAACAGCTCAATGCGTGGTTGTATCAGGTCACCAGGGTATACAAGGGAAAGGAACATGTTGAAGTCGAGTTTAATATTGGACCTATACCTGTGGATGATGGATTTGGGAAAGAAATAGCAACTCAAATCAAGACAAACTTGAAGACCAATAAAACATTCTATACGGATTCTAATGGGAGGGACTTCATAAAAAGGGTTCGAGATTACAGAGAAGACTGGGACCTGCAAGTGACCGAACCAATTGCTGGAAATTATTACCCTATAAACCTTGGAATATATGTGGAGGATGAAACCACCGAACTCTCTGTATTGGTAGACCGTGCTGTGGGAGGGTCCAGTTTGGTGGATGGTCAAATAGAACTGATGCTCCACAGGAGGCTCATTCATGATGATGCTAAAGGTGTTGGCGAGGCACTAAATGAAGAAGTTTGTGTGCTCAATGATTGCAAGGGTTTAATTGTCCAAGGAAAATTTTATGTGAGAATCGATCCCCGAGGAGAAGGAGCCAAGTGGCGTCGCAGTTTTGGGCAAGAAATATATTCTCCTCTTCTTTTGGCCTTCACGGAACAGGATGGTAATAGTTGGATAAATTCCCATGTACCGACATTTTCAGCGATTGACCCTTCCTACAGCTTACCTAACAACATTGCAGTGATAACACTCCAGGAACTTGAAAGTGGAAAAGTACTCCTTCGGTTGGCTCACTTATATGAGACCGGAGAGGACAAAGACTACTCTGTAATGTCAAGTGTGGAACTGAAAAGGCTGTTCCCCAACAAGAAGATAAGTAAAGTGACGGAGATGAATTTATCGGCTAATCAAGAAAAAGCGGAGATGGAGAGGAAGAGACTAGCCTGGAAGGTGAAAGGCCCTATGGAAGCAGCAAAAGGCGCAAGGGGTGGACCTTTAGATCCCAAAATGCTGGTGGTGGAACTTGCCCCAATGGAAATCCGGACCTTCTTAATTAATTTTGAAGTCATTAAAATGTTTGGTTCTTAAAAATAGGAAACATCACCGCTCGTAAGGAATGATTTTTTGTTGGTTCATGCTTCATTGCTTCCCGGAGGATCTTGCCTAAATCAAAGTTCTTACTATCACGGTAGTGATAAAATTTTGTAAATTATAACCCTAAAATTCTAATATAAAATAACAGTGAACTTTATTATGTGAAGATGCTAATGTTTTGAGTTGCAGAAGTTATAGCCTGCACTCATTACCGGTA

Network for GWHGAAZE025467

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01074.23	Glyco_hydro_38N	11	298	1.00E-78
PF09261.12	Alpha-mann_mid	303	395	1.60E-20
PF07748.14	Glyco_hydro_38C	547	762	1.50E-49
PF17677.2	Glyco_hydro38C2	845	951	1.10E-09

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01191	MAN2C1	Other glycan degradation	map00511

Gene Ontology

GO term	Ontology	Name
GO:0006013	biological_process	mannose metabolic process
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004559	molecular_function	alpha-mannosidase activity
GO:0003824	molecular_function	catalytic activity
GO:0030246	molecular_function	carbohydrate binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	73.781
	SRR3591706	second leaf	29.798
	SRR3591707	mature leaf	19.750
	SRR3591708	Shoot apex	42.567
	SRR3591709	Stem	70.275
	SRR3591710	White floral bud	35.523
	SRR3591711	White flower	40.202
	SRR3591712	Green floral bud	20.107
	SRR3591713	Yellow flower	32.627
SRP173429	SRR8316895	Juvenile bud stage	22.894
	SRR8316896	Juvenile bud stage	30.318
	SRR8316897	Juvenile bud stage	15.840
	SRR8316894	Third green stage	12.396
	SRR8316900	Third green stage	21.804
	SRR8316901	Third green stage	20.923
	SRR8316898	Complete white stage	9.326
	SRR8316899	Complete white stage	20.833
	SRR8316903	Complete white stage	18.074
	SRR8316902	Silver flowering stage	9.212
	SRR8316904	Silver flowering stage	14.818
	SRR8316905	Silver flowering stage	7.418
	SRR8316906	Gold flowering stage	21.018
	SRR8316907	Gold flowering stage	23.832
	SRR8316908	Gold flowering stage	22.147
SRP132670	SRR6706286	Control	17.912
	SRR6706287	Light intensity 50%	16.647
	SRR6706288	Light intensity 20%	17.802
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	30.387
	CNS0095593	Slightly white alabastrum(diploid) 2	23.801
	CNS0095594	Slightly white alabastrum(diploid) 3	25.596
	CNS0095595	Whole white alabastrum(diploid) 2	17.881
	CNS0095596	Whole white alabastrum(diploid) 3	19.109
	CNS0095597	Whole white alabastrum(diploid) 4	17.667
	CNS0095598	Silvery flower (diploied) 1	34.566
	CNS0095599	Silvery flower (diploied) 2	34.839
	CNS0095600	Silvery flower (diploied) 3	36.561
	CNS0095601	Golden flower (diploid) 1	36.086
	CNS0095602	Golden flower (diploid) 2	41.440
	CNS0095603	Golden flower (diploid) 3	38.207
	CNS0095604	Slightly white alabastrum(tetraploid) 1	23.662
	CNS0095605	Slightly white alabastrum(tetraploid) 2	22.235
	CNS0095606	Slightly white alabastrum(tetraploid) 3	36.158
	CNS0095607	Whole white alabastrum(tetraploid) 1	16.913
	CNS0095608	Whole white alabastrum(tetraploid) 2	12.233
	CNS0095609	Whole white alabastrum(tetraploid) 3	22.314
	CNS0095610	Silvery flower (tetraploid) 1	39.186
	CNS0095611	Silvery flower (tetraploid) 2	41.502
	CNS0095612	Silvery flower (tetraploid) 3	25.720
	CNS0095613	Golden flower (tetraploid) 1	24.722
	CNS0095614	Golden flower (tetraploid) 2	38.565
	CNS0095615	Golden flower (tetraploid) 3	34.980
CRA001975	CRR073297	Stem 1	25.401
	CRR073298	Stem 2	20.105
	CRR073299	Stem 3	17.554
	CRR073300	Leaf 1	17.619
	CRR073301	Leaf 2	17.422
	CRR073302	Leaf 3	14.674
	CRR073303	Juvenile bud 1	13.326
	CRR073304	Juvenile bud 2	9.986
	CRR073305	Juvenile bud 3	20.592
	CRR073306	Third green 1	2.863
	CRR073307	Third green 2	3.240
	CRR073308	Third green 3	3.762
	CRR073309	Second white 1	4.449
	CRR073310	Second white 2	4.880
	CRR073311	Second white 3	4.629
	CRR073312	Silver flowering 1	2.480
	CRR073313	Silver flowering 2	4.983
	CRR073314	Silver flowering 3	3.733
	CRR073315	Gold flowering 1	5.300
	CRR073316	Gold flowering 2	10.877
	CRR073317	Gold flowering 3	4.528
	CRR073318	Tawny withering 1	18.583
	CRR073319	Tawny withering 2	16.245
	CRR073320	Tawny withering 3	20.780