Gene detail

Detail information of GWHGAAZE025469

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010660678.1	9.9537E-103	PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 [Vitis vinifera]
COG	YP_002763242.1	4E-12	hypothetical protein GAU_3730
Swissprot	tr\|Q8GZB6\|SUVH4_ARATH	4E-90	Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4
trEMBL	tr\|F6H428\|F6H428_VITVI	8E-104	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB46971.1}
TAIR10	AT5G13960.1	2E-76	SU(VAR)3-9 homolog 4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	61694446	61697798	-
GWHAAZE00000007	mRNA	61694446	61697798	-
GWHAAZE00000007	exon	61697759	61697798	-
GWHAAZE00000007	exon	61697407	61697555	-
GWHAAZE00000007	exon	61696901	61697083	-
GWHAAZE00000007	exon	61695827	61696009	-
GWHAAZE00000007	exon	61695057	61695160	-
GWHAAZE00000007	exon	61694570	61694627	-
GWHAAZE00000007	exon	61694446	61694481	-
GWHAAZE00000007	CDS	61697759	61697798	-
GWHAAZE00000007	CDS	61697407	61697555	-
GWHAAZE00000007	CDS	61696901	61697083	-
GWHAAZE00000007	CDS	61695827	61696009	-
GWHAAZE00000007	CDS	61695057	61695160	-
GWHAAZE00000007	CDS	61694570	61694627	-
GWHAAZE00000007	CDS	61694446	61694481	-

Transcript Sequence
>GWHTAAZE025503 ATGGCTCTGACTTCCCATATGTTCATAAGGATGGAGGCAGATCTTCTTTATGATGGTTATGTTGCCTTCATTGCCCATTACAGGCTTATTGAAGCCAAGGATGTTGTATTTGAGTGCGGCCCAAACTGTGGCTGTGGGCCTGACTGTGTCAACAGGACGTCCCAGAGAGGACTGAAGCATAGACTTGAGGTTTTCAAGACTCCAAATAAAGGCTGGGCAGTTAGGTCTTGGGATACGATTCGTTCTGGTGCTGTTGTTTGTGAGTATATGGGAGTACTTAGGAAGACAGATGACCTGGACACTGTTACGGACAACAGTTACATTTTTGACATCGACTGCTTACAAACAATTAAGGGGCTGGATGGACGGGAGAGACGCTTTCGAGATGTGTCGATCTCACATTTGGTGAAGGAGGACGACAAGGACAGCGGTCCAGAATTCTGCATTGATGCCGGCAGCACTGGCAACGTTGCGAGGTTTATCAATCATAGCTGCCAGCCAAATTTGTTTGTTCAGTGCGTGTTGAGTGATCACCACGACATGAAACTGGCACGGGAGCTTACCTATGACTATGGCTATGTGCTTGATAGTGTCATCGGTGCAGATGGCAAGATTAAGAAGATGCCATGCTATTGTGGCGCGGCTGATTGTAGAAAGAGTAGCAGCCCCTACTCATTTACTTTCAGTTGCAGGGACCTCGGTGGAATCTTTCGCCAGGCCTTTGCAGTTGTGATTGGTGACATGATTTCTTAA

Network for GWHGAAZE025469

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00856.29	SET	71	177	1.00E-10

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	SET

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	21.440
	SRR3591706	second leaf	13.342
	SRR3591707	mature leaf	10.240
	SRR3591708	Shoot apex	31.339
	SRR3591709	Stem	25.016
	SRR3591710	White floral bud	19.540
	SRR3591711	White flower	19.815
	SRR3591712	Green floral bud	25.876
	SRR3591713	Yellow flower	23.475
SRP173429	SRR8316895	Juvenile bud stage	14.454
	SRR8316896	Juvenile bud stage	21.342
	SRR8316897	Juvenile bud stage	10.146
	SRR8316894	Third green stage	8.187
	SRR8316900	Third green stage	24.365
	SRR8316901	Third green stage	22.302
	SRR8316898	Complete white stage	5.098
	SRR8316899	Complete white stage	23.515
	SRR8316903	Complete white stage	12.870
	SRR8316902	Silver flowering stage	8.559
	SRR8316904	Silver flowering stage	10.786
	SRR8316905	Silver flowering stage	5.213
	SRR8316906	Gold flowering stage	16.649
	SRR8316907	Gold flowering stage	15.760
	SRR8316908	Gold flowering stage	19.908
SRP132670	SRR6706286	Control	17.375
	SRR6706287	Light intensity 50%	18.782
	SRR6706288	Light intensity 20%	20.153
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	20.890
	CNS0095593	Slightly white alabastrum(diploid) 2	17.722
	CNS0095594	Slightly white alabastrum(diploid) 3	16.149
	CNS0095595	Whole white alabastrum(diploid) 2	17.242
	CNS0095596	Whole white alabastrum(diploid) 3	10.925
	CNS0095597	Whole white alabastrum(diploid) 4	12.366
	CNS0095598	Silvery flower (diploied) 1	16.109
	CNS0095599	Silvery flower (diploied) 2	13.029
	CNS0095600	Silvery flower (diploied) 3	17.383
	CNS0095601	Golden flower (diploid) 1	17.809
	CNS0095602	Golden flower (diploid) 2	14.731
	CNS0095603	Golden flower (diploid) 3	13.671
	CNS0095604	Slightly white alabastrum(tetraploid) 1	20.277
	CNS0095605	Slightly white alabastrum(tetraploid) 2	18.203
	CNS0095606	Slightly white alabastrum(tetraploid) 3	30.210
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.209
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.771
	CNS0095609	Whole white alabastrum(tetraploid) 3	20.586
	CNS0095610	Silvery flower (tetraploid) 1	18.926
	CNS0095611	Silvery flower (tetraploid) 2	18.939
	CNS0095612	Silvery flower (tetraploid) 3	16.170
	CNS0095613	Golden flower (tetraploid) 1	15.564
	CNS0095614	Golden flower (tetraploid) 2	16.417
	CNS0095615	Golden flower (tetraploid) 3	12.461
CRA001975	CRR073297	Stem 1	23.579
	CRR073298	Stem 2	23.535
	CRR073299	Stem 3	24.585
	CRR073300	Leaf 1	25.860
	CRR073301	Leaf 2	26.611
	CRR073302	Leaf 3	21.704
	CRR073303	Juvenile bud 1	16.074
	CRR073304	Juvenile bud 2	11.799
	CRR073305	Juvenile bud 3	20.096
	CRR073306	Third green 1	6.658
	CRR073307	Third green 2	4.605
	CRR073308	Third green 3	6.646
	CRR073309	Second white 1	7.882
	CRR073310	Second white 2	7.996
	CRR073311	Second white 3	8.707
	CRR073312	Silver flowering 1	6.185
	CRR073313	Silver flowering 2	8.258
	CRR073314	Silver flowering 3	9.155
	CRR073315	Gold flowering 1	7.024
	CRR073316	Gold flowering 2	10.068
	CRR073317	Gold flowering 3	5.152
	CRR073318	Tawny withering 1	15.303
	CRR073319	Tawny withering 2	13.696
	CRR073320	Tawny withering 3	16.970