Gene detail

Detail information of GWHGAAZE025488

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011076541.1	0	PREDICTED: cysteine--tRNA ligase-like [Sesamum indicum]
COG	YP_899729.1	2E-138	cysteinyl-tRNA synthetase
trEMBL	tr\|D7TUC2\|D7TUC2_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI34097.3}
TAIR10	AT5G38830.1	2E-168	Cysteinyl-tRNA synthetase, class Ia family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	61888481	61893281	-
GWHAAZE00000007	mRNA	61888481	61893281	-
GWHAAZE00000007	exon	61893197	61893281	-
GWHAAZE00000007	exon	61892193	61892293	-
GWHAAZE00000007	exon	61891547	61891708	-
GWHAAZE00000007	exon	61890868	61891038	-
GWHAAZE00000007	exon	61890259	61890540	-
GWHAAZE00000007	exon	61890031	61890156	-
GWHAAZE00000007	exon	61889375	61889608	-
GWHAAZE00000007	exon	61889153	61889269	-
GWHAAZE00000007	exon	61888481	61888846	-
GWHAAZE00000007	CDS	61893197	61893281	-
GWHAAZE00000007	CDS	61892193	61892293	-
GWHAAZE00000007	CDS	61891547	61891708	-
GWHAAZE00000007	CDS	61890868	61891038	-
GWHAAZE00000007	CDS	61890259	61890540	-
GWHAAZE00000007	CDS	61890031	61890156	-
GWHAAZE00000007	CDS	61889375	61889608	-
GWHAAZE00000007	CDS	61889153	61889269	-
GWHAAZE00000007	CDS	61888481	61888846	-

Transcript Sequence
>GWHTAAZE025522 ATGGCAAAACAACAGGAATTCCAGGTGTATAACAGTATGACGAAACAAAAAGAGATCTTCAAGCCTAGAGTTCCAGGCAAGGTTGATTCTGATCATGCTTCAGCCGAATTGAGATTGTGCAGGTACCTAAAACATTTGGGATATGAAGTTGTCTATGTGCGAAATTTCACGGATGTTGATGACAAGATAATTCGTAGAGCGAATGAGCTTGGGGAGGAGGCATTAGCTTTGAGTGGTCGTTTCTGCCAAGAATTTCTGGATGATATGGTTGATCTTCAGTGCCTCCCCCCTACCCATCAGCCTCGTGTTTCTGATCATATGGACCAAATCAGGAATATGATAGCTCAGATAATTAGTAATGGTTGTGCTTATCCGGTAGATGGAGATGTGTACTTCTCTGTTGATAATTCCCCCAATTATGGCCGATTATCGGGGCGGAAGTTAGAAGACAATAGAGCTGGTGAACGGGTTGCTGTTGATTCGAGAAAGCGAAATCCTGCTGACTTTGCGCTGTGGAAGGCTGCAAAGCCTGGGGAGCCAAGTTGGGACAGCCCTTGGGGTCCAGGAAGACCAGGATGGCACATAGAATGTAGTGCGATGAGTGCTGAATATCTCACCTACTCTTTTGATATCCATGGCGGTGGTATGGATTTGATCTTTCCACATCACGAAAATGAGATTGCACAGAGTTGTGCTGCCTGCCCCGAGAGCAACGTGAGTTACTGGGTCCATAACGGGTTTGTAACTGCAAATGATGAGAAAATGTCGAAATCACTTGGTAACTTCTTCACCATTCGTGAGGTTACCAAACTGTACCATCCACTTGCATTGAGGCATTTCTTGATGGGCACCCAGTACCGTTCTCCTGTCAATTACTCGCTCTCACAGCTAGACATTGCATCGGAGGCGGTTTTTTATATATATCAGACCCTGCAAGATTGTGAAGATGCTTTGTCACCATTTCGAGAAGGAAGCCAAAAGCAGGGAACTGAAACAAAGGCTCGAACAGCTCGCGTTACTCCAGCTGCCCAAGAATGCATCACTAAGCTCCGTAATGATTTTGAGACAAAAATGTCGGACGATCTGAACACACCCACAATATTAAACGGTGCTCTACAGGAAGCATTGAGATTTATCAACAGCTCTTTGAACCTGCTCAAAAAGAAGCAACAACAAAAACAACAATTATCAGTTATTCAGTCCCTTGAAGAATTACAGAAAGAAGTGAAGGAAGTTTTGAACGTTTTGGGGTTGCTCTCCAGTTTAACTTATTCTGAGGTTCTACAGCAATTGAAAGATAAAGCGCTGAAGAGAGCAGAGTTGAGAGAAGATGAGATAATGAATCTGATAGAGGAAAGGGCAGTGGCAAGGAAAAACAAAATGTTTTCCAGAGGTGATGAAATTAGGAGTGAATTGGCGGCCAAAGGCATTGCTCTAATGGATGTGGGCAAGGAAACTGTTTGGAGGCCATGTGTCCCTCTTCCCCAAGAGTCGCCGCAACCGGCCACAAAAGAACAGCCACAGACTATTGCAATAGGACAACCACAGCCAGCAGCCTCAAAAGAACAGCCGCCGGCAGCTGGAGAAGGACAGCCAGAGGCAGCTGCAAATGAACAGCAGAAGGTACCACCAACTTCAGGTTGA

Network for GWHGAAZE025488

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01406.20	tRNA-synt_1e	40	299	2.50E-106
PF09190.12	DALR_2	354	420	1.70E-05

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01883	CARS, cysS	Aminoacyl-tRNA biosynthesis	map00970

Gene Ontology

GO term	Ontology	Name
GO:0006423	biological_process	cysteinyl-tRNA aminoacylation
GO:0006418	biological_process	tRNA aminoacylation for protein translation
GO:0005737	cellular_component	cytoplasm
GO:0004817	molecular_function	cysteine-tRNA ligase activity
GO:0005524	molecular_function	ATP binding
GO:0000166	molecular_function	nucleotide binding
GO:0004812	molecular_function	aminoacyl-tRNA ligase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	55.432
	SRR3591706	second leaf	31.110
	SRR3591707	mature leaf	44.223
	SRR3591708	Shoot apex	50.003
	SRR3591709	Stem	63.619
	SRR3591710	White floral bud	54.674
	SRR3591711	White flower	65.264
	SRR3591712	Green floral bud	56.826
	SRR3591713	Yellow flower	65.921
SRP173429	SRR8316895	Juvenile bud stage	28.321
	SRR8316896	Juvenile bud stage	38.296
	SRR8316897	Juvenile bud stage	17.790
	SRR8316894	Third green stage	14.333
	SRR8316900	Third green stage	49.870
	SRR8316901	Third green stage	43.575
	SRR8316898	Complete white stage	20.753
	SRR8316899	Complete white stage	69.231
	SRR8316903	Complete white stage	29.699
	SRR8316902	Silver flowering stage	17.548
	SRR8316904	Silver flowering stage	22.880
	SRR8316905	Silver flowering stage	11.288
	SRR8316906	Gold flowering stage	42.574
	SRR8316907	Gold flowering stage	38.134
	SRR8316908	Gold flowering stage	41.644
SRP132670	SRR6706286	Control	47.267
	SRR6706287	Light intensity 50%	42.308
	SRR6706288	Light intensity 20%	46.698
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	34.620
	CNS0095593	Slightly white alabastrum(diploid) 2	38.252
	CNS0095594	Slightly white alabastrum(diploid) 3	35.417
	CNS0095595	Whole white alabastrum(diploid) 2	41.923
	CNS0095596	Whole white alabastrum(diploid) 3	39.142
	CNS0095597	Whole white alabastrum(diploid) 4	42.799
	CNS0095598	Silvery flower (diploied) 1	51.095
	CNS0095599	Silvery flower (diploied) 2	43.446
	CNS0095600	Silvery flower (diploied) 3	64.859
	CNS0095601	Golden flower (diploid) 1	51.761
	CNS0095602	Golden flower (diploid) 2	75.459
	CNS0095603	Golden flower (diploid) 3	71.927
	CNS0095604	Slightly white alabastrum(tetraploid) 1	38.690
	CNS0095605	Slightly white alabastrum(tetraploid) 2	39.188
	CNS0095606	Slightly white alabastrum(tetraploid) 3	61.796
	CNS0095607	Whole white alabastrum(tetraploid) 1	40.737
	CNS0095608	Whole white alabastrum(tetraploid) 2	42.206
	CNS0095609	Whole white alabastrum(tetraploid) 3	56.710
	CNS0095610	Silvery flower (tetraploid) 1	70.424
	CNS0095611	Silvery flower (tetraploid) 2	74.214
	CNS0095612	Silvery flower (tetraploid) 3	59.327
	CNS0095613	Golden flower (tetraploid) 1	53.848
	CNS0095614	Golden flower (tetraploid) 2	70.408
	CNS0095615	Golden flower (tetraploid) 3	58.011
CRA001975	CRR073297	Stem 1	53.259
	CRR073298	Stem 2	54.871
	CRR073299	Stem 3	53.143
	CRR073300	Leaf 1	64.739
	CRR073301	Leaf 2	59.527
	CRR073302	Leaf 3	49.534
	CRR073303	Juvenile bud 1	62.051
	CRR073304	Juvenile bud 2	47.386
	CRR073305	Juvenile bud 3	65.719
	CRR073306	Third green 1	24.099
	CRR073307	Third green 2	18.295
	CRR073308	Third green 3	24.177
	CRR073309	Second white 1	30.768
	CRR073310	Second white 2	32.473
	CRR073311	Second white 3	33.343
	CRR073312	Silver flowering 1	28.135
	CRR073313	Silver flowering 2	30.526
	CRR073314	Silver flowering 3	28.158
	CRR073315	Gold flowering 1	28.826
	CRR073316	Gold flowering 2	37.249
	CRR073317	Gold flowering 3	27.280
	CRR073318	Tawny withering 1	55.793
	CRR073319	Tawny withering 2	54.346
	CRR073320	Tawny withering 3	51.664