Gene detail

Detail information of GWHGAAZE025497

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_009802178.1	PREDICTED: acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal isoform X1 [Nicotiana sylvestris]
COG	YP_003809134.1	acetate/CoA ligase
Swissprot	tr\|B9DGD6\|ACS_ARATH	Acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal (Precursor)
trEMBL	tr\|A0A059BDZ5\|A0A059BDZ5_EUCGR	Uncharacterized protein {ECO:0000313\|EMBL:KCW64269.1}
TAIR10	AT5G36880.2	acetyl-CoA synthetase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	61983921	61995522	+
GWHAAZE00000007	mRNA	61983921	61995522	+
GWHAAZE00000007	exon	61983921	61984064	+
GWHAAZE00000007	exon	61984652	61984795	+
GWHAAZE00000007	exon	61984930	61985085	+
GWHAAZE00000007	exon	61985196	61985359	+
GWHAAZE00000007	exon	61985450	61985577	+
GWHAAZE00000007	exon	61986030	61986112	+
GWHAAZE00000007	exon	61989731	61989832	+
GWHAAZE00000007	exon	61989915	61990003	+
GWHAAZE00000007	exon	61990111	61990201	+
GWHAAZE00000007	exon	61991214	61991297	+
GWHAAZE00000007	exon	61991830	61991906	+
GWHAAZE00000007	exon	61991990	61992068	+
GWHAAZE00000007	exon	61992165	61992233	+
GWHAAZE00000007	exon	61992342	61992517	+
GWHAAZE00000007	exon	61992672	61992728	+
GWHAAZE00000007	exon	61993909	61993999	+
GWHAAZE00000007	exon	61994106	61994191	+
GWHAAZE00000007	exon	61994490	61994553	+
GWHAAZE00000007	exon	61995337	61995522	+
GWHAAZE00000007	CDS	61983921	61984064	+
GWHAAZE00000007	CDS	61984652	61984795	+
GWHAAZE00000007	CDS	61984930	61985085	+
GWHAAZE00000007	CDS	61985196	61985359	+
GWHAAZE00000007	CDS	61985450	61985577	+
GWHAAZE00000007	CDS	61986030	61986112	+
GWHAAZE00000007	CDS	61989731	61989832	+
GWHAAZE00000007	CDS	61989915	61990003	+
GWHAAZE00000007	CDS	61990111	61990201	+
GWHAAZE00000007	CDS	61991214	61991297	+
GWHAAZE00000007	CDS	61991830	61991906	+
GWHAAZE00000007	CDS	61991990	61992068	+
GWHAAZE00000007	CDS	61992165	61992233	+
GWHAAZE00000007	CDS	61992342	61992517	+
GWHAAZE00000007	CDS	61992672	61992728	+
GWHAAZE00000007	CDS	61993909	61993999	+
GWHAAZE00000007	CDS	61994106	61994191	+
GWHAAZE00000007	CDS	61994490	61994553	+
GWHAAZE00000007	CDS	61995337	61995522	+

Transcript Sequence
>GWHTAAZE025531 ATGACTACTAATAGTAGAAAGAGGACATCCGATCACCTGAGACATGTGGAGTCCATGGCCACTCTGCCTTCTGGCGCCGGCACCATATCAAGGTTGAACGCCGTCATTCTCGGAGAGGCTCTTGCTTCCGAGGAGGATGATCTCTATTTGGAGTTGTATAGGAGGTCCATTGAAGACCCCGCCGGATTTTGGTCTGATATTGCGTCGGATTTCTATTGGAATGAGAAATGGGGTCAACAAGTCTACTCAGAGAATCTAGACATCAGGAAAGGGGACATCAAAATCGAGTGGTTCAAGGGTGGTATGACCAACATTTGCTACAACTGCCTGGATAGAAACATTGAGTCTGGAAGTGGTGATAAAATTGCAATTTATTGGGAAGGAAATGAGCCTGGTAATGATGCCGCTTTAACGTACAACCAAATTCTTGAGAAAGTTTGCCAGCTTGCAAATTACCTGAAAGATGTTGGTGTCAGAAAGGGTGATGCTGTTGTGATTTACTTACCCATGCTTTCGGAACTTCCAATAACAATGCTTGCATGTGCTCGCATTGGTGCTGTCCACTCCGTAGGCCTCAGAAGCATATATTCTACTTCCCTTGTAGTTCAGATCATGGATTGCAAACCGAAGGCTGTCATAACTTGCAATGCTGTTAAGAGAGGGTCTAAAATAATTAATCTTAAAGACATAGTTGATGCTGCTCTCACAGAATCATCCCAAAATGGGATCTCTGTAGGTACATGCTTGACCTATGAAAATGAGTCGGCCATGACGAAGGGAGCTACTAAATGGCAAGATAAAAGAGATATATGGTGGCAGGATGTTGTTCCCAAATATCCCAAGACGTGTACTGTGGAGTGGGTAGATGCGGAGGACCCGCTTTTTCTGCTCTATACTAGTGGGAGCACTGGAAAACCCAAGGGTGTTCTGCACACAACAGGAGGATACATGATATACACTGCAACGACATTCAAGTATGCATTCGACTACAAGCCGTCGGACATATATTGGTGTACAGCTGATTGTGGTTGGATCACTGGACACAGCTATGTTACTTATGGGCCTTTGCTAAATGGAGCGACGGTTGTACTTTATGAAGGGGCTCCAAATTATCCCGATGCTGGACGTTGCTGGGACATTGTTGACAAGTATAAGGTGTCATTATTCTACACTGCGCCAACACTGTATGTTACTCGTTATTCTCGCAAATCTTTAAGAGTCCTTGGAAGTGTAGGCGAGCCTATAAATCCTAGTGCATGGAGGTGGTTTTTCAATGTTGTTGGAGATTCGAGGTGCCCAATATCCGACACTTGGTGGCAAACAGAGACTGGTGGCTTCATGATTACTCCTTTACCAGGTGCCTGGCCACAAAAACCTGGTTCAGCTACTTTCCCTTTCTTTGGGGTTCAGCCTGTCATAGTGGATGAGAAGGGTAATGAGATAGAAGGTGAGTGCAGTGGATATTTATGTGTGAAGGGCTCATGGCCTGGAGCATTTCGAACTCTGTATGGGGATCATGAAAGATATGAAACTACATACTTTAAGCCTTTCCCTGGCTATTATTTTAGTGGTGATGGCTGCAGTAGGGACAAGGATGGATATCACTGGCTCACTGGGAGAGTTGATGATGTTATTAATGTTAGTGGACACCGTATCGGCACAGCAGAAGTGGAATCTGCTTTGGTTTCTCATCCCCAGTGTGCTGAAGCTGCTGTTGTCGGTGTTGAGCACGAGGTTAAAGGGCAGGGGATATATGCATTTGTTACTCTGGTGGAGGGTGTTCCATACAGTGATGAGCTCAGAAAAGCCTTGTTCTTGCTGGTATTATTCATGCATAATATAACTTCAACAAGACTAAGAAACCTCCAACTTTTTTCTGCTTTCATTGGAGCATTTGCGGCTCCTGACAAAATCCATTGGGCACCCAGTCTACCAAAGACAAGAAGTGGAAAGATAATGAGGAGGATTCTCAGGAAAATTGCTTCTAGGCAGTTAGATGAGCTCGGCGACACAAGCACTCTAGCTGACCCAAATGTTGTTGATCAGCTTATTTCACTCTACGATTCCTAA

Network for GWHGAAZE025497

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16177.6	ACAS_N	49	109	1.20E-20
PF00501.29	AMP-binding	118	547	1.00E-87
PF13193.7	AMP-binding_C	556	651	9.70E-19

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01895	ACSS1_2, acs	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Glycolysis / Gluconeogenesis	map00010
		Pyruvate metabolism	map00620
		Glyoxylate and dicarboxylate metabolism	map00630
		Propanoate metabolism	map00640
		Carbon fixation pathways in prokaryotes	map00720
		Methane metabolism	map00680

Gene Ontology

GO term	Ontology	Name
GO:0019427	biological_process	acetyl-CoA biosynthetic process from acetate
GO:0003987	molecular_function	acetate-CoA ligase activity
GO:0016208	molecular_function	AMP binding
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	68.147
	SRR3591706	second leaf	29.252
	SRR3591707	mature leaf	25.856
	SRR3591708	Shoot apex	38.704
	SRR3591709	Stem	55.014
	SRR3591710	White floral bud	75.744
	SRR3591711	White flower	80.757
	SRR3591712	Green floral bud	61.514
	SRR3591713	Yellow flower	110.154
SRP173429	SRR8316895	Juvenile bud stage	51.019
	SRR8316896	Juvenile bud stage	77.687
	SRR8316897	Juvenile bud stage	33.247
	SRR8316894	Third green stage	30.337
	SRR8316900	Third green stage	96.159
	SRR8316901	Third green stage	87.609
	SRR8316898	Complete white stage	43.356
	SRR8316899	Complete white stage	109.640
	SRR8316903	Complete white stage	61.906
	SRR8316902	Silver flowering stage	53.550
	SRR8316904	Silver flowering stage	68.696
	SRR8316905	Silver flowering stage	38.899
	SRR8316906	Gold flowering stage	147.999
	SRR8316907	Gold flowering stage	133.503
	SRR8316908	Gold flowering stage	151.178
SRP132670	SRR6706286	Control	108.606
	SRR6706287	Light intensity 50%	110.496
	SRR6706288	Light intensity 20%	117.985
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	51.890
	CNS0095593	Slightly white alabastrum(diploid) 2	53.257
	CNS0095594	Slightly white alabastrum(diploid) 3	49.029
	CNS0095595	Whole white alabastrum(diploid) 2	51.457
	CNS0095596	Whole white alabastrum(diploid) 3	53.955
	CNS0095597	Whole white alabastrum(diploid) 4	42.539
	CNS0095598	Silvery flower (diploied) 1	52.543
	CNS0095599	Silvery flower (diploied) 2	57.640
	CNS0095600	Silvery flower (diploied) 3	112.278
	CNS0095601	Golden flower (diploid) 1	58.984
	CNS0095602	Golden flower (diploid) 2	106.176
	CNS0095603	Golden flower (diploid) 3	101.024
	CNS0095604	Slightly white alabastrum(tetraploid) 1	62.187
	CNS0095605	Slightly white alabastrum(tetraploid) 2	55.651
	CNS0095606	Slightly white alabastrum(tetraploid) 3	102.449
	CNS0095607	Whole white alabastrum(tetraploid) 1	42.554
	CNS0095608	Whole white alabastrum(tetraploid) 2	39.280
	CNS0095609	Whole white alabastrum(tetraploid) 3	91.394
	CNS0095610	Silvery flower (tetraploid) 1	132.835
	CNS0095611	Silvery flower (tetraploid) 2	112.635
	CNS0095612	Silvery flower (tetraploid) 3	127.506
	CNS0095613	Golden flower (tetraploid) 1	103.241
	CNS0095614	Golden flower (tetraploid) 2	138.374
	CNS0095615	Golden flower (tetraploid) 3	114.737
CRA001975	CRR073297	Stem 1	89.845
	CRR073298	Stem 2	80.088
	CRR073299	Stem 3	84.667
	CRR073300	Leaf 1	104.883
	CRR073301	Leaf 2	96.545
	CRR073302	Leaf 3	96.387
	CRR073303	Juvenile bud 1	107.744
	CRR073304	Juvenile bud 2	80.471
	CRR073305	Juvenile bud 3	110.014
	CRR073306	Third green 1	86.252
	CRR073307	Third green 2	59.993
	CRR073308	Third green 3	71.489
	CRR073309	Second white 1	69.572
	CRR073310	Second white 2	97.694
	CRR073311	Second white 3	108.187
	CRR073312	Silver flowering 1	102.513
	CRR073313	Silver flowering 2	89.088
	CRR073314	Silver flowering 3	114.548
	CRR073315	Gold flowering 1	36.292
	CRR073316	Gold flowering 2	62.286
	CRR073317	Gold flowering 3	31.507
	CRR073318	Tawny withering 1	61.035
	CRR073319	Tawny withering 2	50.960
	CRR073320	Tawny withering 3	50.631