Detail information of GWHGAAZE025518


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011096846.15.16131E-80PREDICTED: F-box/FBD/LRR-repeat protein At5g56420-like isoform X2 [Sesamum indicum]
Swissprottr|O23360|FBL93_ARATH4E-22Putative F-box/LRR-repeat protein At4g15060
trEMBLtr|A0A022QP21|A0A022QP21_ERYGU2E-64Uncharacterized protein {ECO:0000313|EMBL:EYU28235.1}
TAIR10AT4G15060.13E-20Without detailed annotation

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene6242018562421736-
GWHAAZE00000007mRNA6242018562421736-
GWHAAZE00000007exon6242105462421736-
GWHAAZE00000007exon6242018562420505-
GWHAAZE00000007five_prime_UTR6242165762421736-
GWHAAZE00000007CDS6242105462421656-
GWHAAZE00000007CDS6242018562420505-
Transcript Sequence

Network for GWHGAAZE025518

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00646.34F-box13518.80E-07
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf2.034
SRR3591706second leaf3.313
SRR3591707mature leaf2.783
SRR3591708Shoot apex2.506
SRR3591709Stem4.083
SRR3591710White floral bud2.243
SRR3591711White flower2.584
SRR3591712Green floral bud3.403
SRR3591713Yellow flower1.648
SRP173429 SRR8316895Juvenile bud stage 2.691
SRR8316896Juvenile bud stage 3.406
SRR8316897Juvenile bud stage 2.002
SRR8316894Third green stage 1.460
SRR8316900Third green stage 2.367
SRR8316901Third green stage 2.574
SRR8316898Complete white stage 1.738
SRR8316899Complete white stage 4.743
SRR8316903Complete white stage 2.616
SRR8316902Silver flowering stage0.431
SRR8316904Silver flowering stage1.965
SRR8316905Silver flowering stage0.574
SRR8316906Gold flowering stage 2.171
SRR8316907Gold flowering stage 2.627
SRR8316908Gold flowering stage 2.012
SRP132670SRR6706286Control2.581
SRR6706287Light intensity 50%3.365
SRR6706288Light intensity 20%3.321
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.858
CNS0095593Slightly white alabastrum(diploid) 20.602
CNS0095594Slightly white alabastrum(diploid) 31.056
CNS0095595Whole white alabastrum(diploid) 21.119
CNS0095596Whole white alabastrum(diploid) 31.763
CNS0095597Whole white alabastrum(diploid) 40.919
CNS0095598Silvery flower (diploied) 13.053
CNS0095599Silvery flower (diploied) 23.019
CNS0095600Silvery flower (diploied) 33.137
CNS0095601Golden flower (diploid) 13.911
CNS0095602Golden flower (diploid) 23.924
CNS0095603Golden flower (diploid) 33.578
CNS0095604Slightly white alabastrum(tetraploid) 11.882
CNS0095605Slightly white alabastrum(tetraploid) 21.760
CNS0095606Slightly white alabastrum(tetraploid) 33.944
CNS0095607Whole white alabastrum(tetraploid) 11.876
CNS0095608Whole white alabastrum(tetraploid) 20.572
CNS0095609Whole white alabastrum(tetraploid) 32.527
CNS0095610Silvery flower (tetraploid) 13.003
CNS0095611Silvery flower (tetraploid) 23.559
CNS0095612Silvery flower (tetraploid) 31.897
CNS0095613Golden flower (tetraploid) 11.220
CNS0095614Golden flower (tetraploid) 22.334
CNS0095615Golden flower (tetraploid) 31.708
CRA001975CRR073297Stem 12.746
CRR073298Stem 23.491
CRR073299Stem 32.061
CRR073300Leaf 13.505
CRR073301Leaf 21.690
CRR073302Leaf 32.800
CRR073303Juvenile bud 12.563
CRR073304Juvenile bud 22.215
CRR073305Juvenile bud 32.386
CRR073306Third green 10.233
CRR073307Third green 20.080
CRR073308Third green 30.604
CRR073309Second white 10.030
CRR073310Second white 20.269
CRR073311Second white 30.297
CRR073312Silver flowering 10.490
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 12.232
CRR073316Gold flowering 22.297
CRR073317Gold flowering 32.452
CRR073318Tawny withering 13.439
CRR073319Tawny withering 20.424
CRR073320Tawny withering 32.949