Detail information of GWHGAAZE025534


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009760786.10PREDICTED: phospholipase D alpha 1-like [Nicotiana sylvestris]
COGYP_003981721.11E-33phospholipase D
Swissprottr|Q41142|PLDA1_RICCO0Phospholipase D alpha 1 (Precursor)
trEMBLtr|M1AKN6|M1AKN6_SOLTU0Phospholipase D {ECO:0000256|PIRNR:PIRNR036470}
TAIR10AT3G15730.10phospholipase D alpha 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene6271589462735260-
GWHAAZE00000007mRNA6271589462735260-
GWHAAZE00000007exon6271589462716465-
GWHAAZE00000007exon6271674962718645-
GWHAAZE00000007exon6272988862730004-
GWHAAZE00000007exon6273075662730935-
GWHAAZE00000007exon6273272762732882-
GWHAAZE00000007exon6273298462733088-
GWHAAZE00000007exon6273448362734575-
GWHAAZE00000007exon6273488962735260-
GWHAAZE00000007CDS6273488962735260-
GWHAAZE00000007CDS6273448362734575-
GWHAAZE00000007CDS6273298462733088-
GWHAAZE00000007CDS6273272762732882-
GWHAAZE00000007CDS6273075662730935-
GWHAAZE00000007CDS6272988862730004-
GWHAAZE00000007CDS6271674962718645-
GWHAAZE00000007CDS6271601462716465-
GWHAAZE00000007three_prime_UTR6271589462716013-
Transcript Sequence

Network for GWHGAAZE025534

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00566.19RabGAP-TBC1493351.60E-13
PF00168.31C23544365.00E-12
PF00614.23PLDc6356739.60E-10
PF00614.23PLDc9649901.90E-07
PF12357.9PLD_C103511061.80E-27
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01115PLD1_2 Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Glycerophospholipid metabolismmap00564
Ether lipid metabolismmap00565
Ras signaling pathwaymap04014
Phospholipase D signaling pathwaymap04072
Sphingolipid signaling pathwaymap04071
cAMP signaling pathwaymap04024
Endocytosismap04144
Fc gamma R-mediated phagocytosismap04666
GnRH signaling pathwaymap04912
Parathyroid hormone synthesis, secretion and actionmap04928
Glutamatergic synapsemap04724

Gene Ontology

GO term OntologyName
GO:0003824molecular_functioncatalytic activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf48.169
SRR3591706second leaf8.118
SRR3591707mature leaf5.183
SRR3591708Shoot apex12.383
SRR3591709Stem55.150
SRR3591710White floral bud6.069
SRR3591711White flower2.801
SRR3591712Green floral bud4.101
SRR3591713Yellow flower1.282
SRP173429 SRR8316895Juvenile bud stage 2.510
SRR8316896Juvenile bud stage 3.223
SRR8316897Juvenile bud stage 1.515
SRR8316894Third green stage 1.477
SRR8316900Third green stage 3.030
SRR8316901Third green stage 2.897
SRR8316898Complete white stage 6.264
SRR8316899Complete white stage 5.400
SRR8316903Complete white stage 9.362
SRR8316902Silver flowering stage1.330
SRR8316904Silver flowering stage1.863
SRR8316905Silver flowering stage0.895
SRR8316906Gold flowering stage 1.188
SRR8316907Gold flowering stage 1.322
SRR8316908Gold flowering stage 1.146
SRP132670SRR6706286Control3.976
SRR6706287Light intensity 50%4.061
SRR6706288Light intensity 20%3.339
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.423
CNS0095593Slightly white alabastrum(diploid) 21.429
CNS0095594Slightly white alabastrum(diploid) 32.187
CNS0095595Whole white alabastrum(diploid) 22.279
CNS0095596Whole white alabastrum(diploid) 31.946
CNS0095597Whole white alabastrum(diploid) 42.173
CNS0095598Silvery flower (diploied) 15.531
CNS0095599Silvery flower (diploied) 23.835
CNS0095600Silvery flower (diploied) 35.206
CNS0095601Golden flower (diploid) 14.407
CNS0095602Golden flower (diploid) 24.618
CNS0095603Golden flower (diploid) 34.826
CNS0095604Slightly white alabastrum(tetraploid) 11.779
CNS0095605Slightly white alabastrum(tetraploid) 21.864
CNS0095606Slightly white alabastrum(tetraploid) 34.916
CNS0095607Whole white alabastrum(tetraploid) 12.056
CNS0095608Whole white alabastrum(tetraploid) 21.325
CNS0095609Whole white alabastrum(tetraploid) 32.166
CNS0095610Silvery flower (tetraploid) 12.741
CNS0095611Silvery flower (tetraploid) 24.250
CNS0095612Silvery flower (tetraploid) 316.883
CNS0095613Golden flower (tetraploid) 12.057
CNS0095614Golden flower (tetraploid) 22.414
CNS0095615Golden flower (tetraploid) 31.907
CRA001975CRR073297Stem 13.311
CRR073298Stem 23.070
CRR073299Stem 35.764
CRR073300Leaf 12.384
CRR073301Leaf 22.229
CRR073302Leaf 32.645
CRR073303Juvenile bud 12.817
CRR073304Juvenile bud 27.101
CRR073305Juvenile bud 33.339
CRR073306Third green 119.899
CRR073307Third green 29.293
CRR073308Third green 310.253
CRR073309Second white 15.539
CRR073310Second white 23.925
CRR073311Second white 33.310
CRR073312Silver flowering 10.774
CRR073313Silver flowering 21.241
CRR073314Silver flowering 31.061
CRR073315Gold flowering 15.840
CRR073316Gold flowering 27.125
CRR073317Gold flowering 38.068
CRR073318Tawny withering 138.556
CRR073319Tawny withering 224.811
CRR073320Tawny withering 344.997