Gene detail

Detail information of GWHGAAZE025536

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010250105.1	1.7441E-150	PREDICTED: peroxidase 25 [Nelumbo nucifera]
Swissprot	tr\|O80822\|PER25_ARATH	3E-130	Peroxidase 25 (Precursor)
trEMBL	tr\|D7TC15\|D7TC15_VITVI	1E-147	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI28200.3}
TAIR10	AT2G41480.1	1E-56	Peroxidase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	62806811	62809836	-
GWHAAZE00000007	mRNA	62806811	62809836	-
GWHAAZE00000007	exon	62809621	62809836	-
GWHAAZE00000007	exon	62808836	62809019	-
GWHAAZE00000007	exon	62806811	62807232	-
GWHAAZE00000007	CDS	62809621	62809836	-
GWHAAZE00000007	CDS	62808836	62809019	-
GWHAAZE00000007	CDS	62806811	62807232	-

Transcript Sequence
>GWHTAAZE025570 ATGGAAGCAATTATATGTTTGGGTTTGGCAGCAATTATTTTAGGGGTAATGGGTTTGGAGGCAGAAGGTCAAGGAGGATTGAAAAATGGGTTTTATTCATCTTCATGTCCTAAAGCAGAGAATATAGTAAGGTCTACTGTTAATGCCCACTTTAACAAAGATCCAACTATTGCAGCTGCCTTGCTTAGGCTTCACTTCCACGATTGCTTTGTTCAGGGATGTGATGCTTCGATTTTGATAACGGGGGCTTCAGCCGAGAGAAATGCATTGCCAAACCTTGGTTTAAGAGGATTCGAAGTAATTGACGATGCTAAAACACAAGTAGAAGCGTCATGTCCGGGCGTCGTCTCATGTGCTGATATTTTGGCATTGGCTGCTCGTGATGCAGTTGACTTGGTACGTGCACATACAATTGGCCAAACGGATTGCATATTCTTCAAATACCGTTTGTATAACTTCACACCAACCGGAAATGCTGATCCAACACTAAGCCAGGCATCTTTAACACAACTACGAGCTCTTTGTCCTAAAGACAATAATGGATCAAAGCGCGTGGCACTAGATAAGGGTAGCCAGTTGAAATTTGACGCGAGCTACTTCAAGAATGTACGTGATGGTAATGCAATATTAGAGTCGGATCAACGGCTTTGGGGTGATTCTGCAACACGTAGTATTGTTCAAAATTATGCGGGAAGCATTAGAGGTTTACTAGGGTTTAGATTTGATTTCGAGTTTCCTAAAGCTATGATAAAGATGAGTAGCATTGAAGTTAAAACTGGTACCCAAGGAGAGATTAGAAAGATATGTTCAAAGTTTAATTAA

Network for GWHGAAZE025536

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00141.24	peroxidase	43	132	4.90E-32

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00430	E1.11.1.7	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Phenylpropanoid biosynthesis	map00940

Gene Ontology

GO term	Ontology	Name
GO:0006979	biological_process	response to oxidative stress
GO:0055114	biological_process	oxidation-reduction process
GO:0042744	biological_process	hydrogen peroxide catabolic process
GO:0004601	molecular_function	peroxidase activity
GO:0020037	molecular_function	heme binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.827
	SRR3591706	second leaf	2.381
	SRR3591707	mature leaf	2.308
	SRR3591708	Shoot apex	0.653
	SRR3591709	Stem	5.333
	SRR3591710	White floral bud	9.446
	SRR3591711	White flower	6.002
	SRR3591712	Green floral bud	2.425
	SRR3591713	Yellow flower	0.422
SRP173429	SRR8316895	Juvenile bud stage	2.095
	SRR8316896	Juvenile bud stage	0.919
	SRR8316897	Juvenile bud stage	1.487
	SRR8316894	Third green stage	1.283
	SRR8316900	Third green stage	2.851
	SRR8316901	Third green stage	1.854
	SRR8316898	Complete white stage	1.401
	SRR8316899	Complete white stage	5.675
	SRR8316903	Complete white stage	1.369
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.763
	SRR8316905	Silver flowering stage	0.082
	SRR8316906	Gold flowering stage	0.868
	SRR8316907	Gold flowering stage	1.123
	SRR8316908	Gold flowering stage	0.826
SRP132670	SRR6706286	Control	1.956
	SRR6706287	Light intensity 50%	2.236
	SRR6706288	Light intensity 20%	1.522
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.631
	CNS0095593	Slightly white alabastrum(diploid) 2	4.414
	CNS0095594	Slightly white alabastrum(diploid) 3	5.432
	CNS0095595	Whole white alabastrum(diploid) 2	5.517
	CNS0095596	Whole white alabastrum(diploid) 3	0.736
	CNS0095597	Whole white alabastrum(diploid) 4	3.824
	CNS0095598	Silvery flower (diploied) 1	13.505
	CNS0095599	Silvery flower (diploied) 2	11.105
	CNS0095600	Silvery flower (diploied) 3	2.696
	CNS0095601	Golden flower (diploid) 1	2.237
	CNS0095602	Golden flower (diploid) 2	1.657
	CNS0095603	Golden flower (diploid) 3	2.253
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.745
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.500
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.869
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.771
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.198
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.330
	CNS0095610	Silvery flower (tetraploid) 1	3.165
	CNS0095611	Silvery flower (tetraploid) 2	1.814
	CNS0095612	Silvery flower (tetraploid) 3	1.930
	CNS0095613	Golden flower (tetraploid) 1	1.898
	CNS0095614	Golden flower (tetraploid) 2	3.599
	CNS0095615	Golden flower (tetraploid) 3	0.972
CRA001975	CRR073297	Stem 1	0.677
	CRR073298	Stem 2	1.373
	CRR073299	Stem 3	1.472
	CRR073300	Leaf 1	4.257
	CRR073301	Leaf 2	4.074
	CRR073302	Leaf 3	2.143
	CRR073303	Juvenile bud 1	2.275
	CRR073304	Juvenile bud 2	1.120
	CRR073305	Juvenile bud 3	2.350
	CRR073306	Third green 1	0.216
	CRR073307	Third green 2	0.088
	CRR073308	Third green 3	0.937
	CRR073309	Second white 1	0.612
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.010
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.607
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.948
	CRR073316	Gold flowering 2	2.678
	CRR073317	Gold flowering 3	1.070
	CRR073318	Tawny withering 1	1.373
	CRR073319	Tawny withering 2	1.604
	CRR073320	Tawny withering 3	3.032