Detail information of GWHGAAZE025541


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010656423.10PREDICTED: nuclear pore complex protein NUP205 isoform X2 [Vitis vinifera]
Swissprottr|F4KBW6|NU205_ARATH0Nuclear pore complex protein NUP205 {ECO:0000303|PubMed:21189294}
trEMBLtr|D7TC07|D7TC07_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI28192.3}
TAIR10AT5G51200.10Protein of unknown function (DUF3414)

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene6291211862954299-
GWHAAZE00000007mRNA6291211862954299-
GWHAAZE00000007exon6295420762954299-
GWHAAZE00000007exon6295312362953218-
GWHAAZE00000007exon6295214862952222-
GWHAAZE00000007exon6295195162952055-
GWHAAZE00000007exon6295172062951830-
GWHAAZE00000007exon6294871362948739-
GWHAAZE00000007exon6294795262948111-
GWHAAZE00000007exon6294282962942923-
GWHAAZE00000007exon6294249962942514-
GWHAAZE00000007exon6294233362942418-
GWHAAZE00000007exon6294142462941546-
GWHAAZE00000007exon6294077162940998-
GWHAAZE00000007exon6293715762937246-
GWHAAZE00000007exon6293582862935971-
GWHAAZE00000007exon6293529362935439-
GWHAAZE00000007exon6293489862935021-
GWHAAZE00000007exon6293477062934818-
GWHAAZE00000007exon6293459462934693-
GWHAAZE00000007exon6293094862931064-
GWHAAZE00000007exon6293066162930867-
GWHAAZE00000007exon6292966262929763-
GWHAAZE00000007exon6292940562929548-
GWHAAZE00000007exon6292861562928745-
GWHAAZE00000007exon6292840362928522-
GWHAAZE00000007exon6292809362928201-
GWHAAZE00000007exon6292661862926815-
GWHAAZE00000007exon6292408462924202-
GWHAAZE00000007exon6292382062923970-
GWHAAZE00000007exon6292326862923380-
GWHAAZE00000007exon6292308862923169-
GWHAAZE00000007exon6292291762923003-
GWHAAZE00000007exon6292276462922841-
GWHAAZE00000007exon6291962462919827-
GWHAAZE00000007exon6291895062919042-
GWHAAZE00000007exon6291876362918876-
GWHAAZE00000007exon6291830162918455-
GWHAAZE00000007exon6291765662917728-
GWHAAZE00000007exon6291735862917548-
GWHAAZE00000007exon6291687162916997-
GWHAAZE00000007exon6291668262916759-
GWHAAZE00000007exon6291598662916150-
GWHAAZE00000007exon6291473062914900-
GWHAAZE00000007exon6291452062914657-
GWHAAZE00000007exon6291315062913293-
GWHAAZE00000007exon6291286662912988-
GWHAAZE00000007exon6291211862912276-
GWHAAZE00000007CDS6295420762954299-
GWHAAZE00000007CDS6295312362953218-
GWHAAZE00000007CDS6295214862952222-
GWHAAZE00000007CDS6295195162952055-
GWHAAZE00000007CDS6295172062951830-
GWHAAZE00000007CDS6294871362948739-
GWHAAZE00000007CDS6294795262948111-
GWHAAZE00000007CDS6294282962942923-
GWHAAZE00000007CDS6294249962942514-
GWHAAZE00000007CDS6294233362942418-
GWHAAZE00000007CDS6294142462941546-
GWHAAZE00000007CDS6294077162940998-
GWHAAZE00000007CDS6293715762937246-
GWHAAZE00000007CDS6293582862935971-
GWHAAZE00000007CDS6293529362935439-
GWHAAZE00000007CDS6293489862935021-
GWHAAZE00000007CDS6293477062934818-
GWHAAZE00000007CDS6293459462934693-
GWHAAZE00000007CDS6293094862931064-
GWHAAZE00000007CDS6293066162930867-
GWHAAZE00000007CDS6292966262929763-
GWHAAZE00000007CDS6292940562929548-
GWHAAZE00000007CDS6292861562928745-
GWHAAZE00000007CDS6292840362928522-
GWHAAZE00000007CDS6292809362928201-
GWHAAZE00000007CDS6292661862926815-
GWHAAZE00000007CDS6292408462924202-
GWHAAZE00000007CDS6292382062923970-
GWHAAZE00000007CDS6292326862923380-
GWHAAZE00000007CDS6292308862923169-
GWHAAZE00000007CDS6292291762923003-
GWHAAZE00000007CDS6292276462922841-
GWHAAZE00000007CDS6291962462919827-
GWHAAZE00000007CDS6291895062919042-
GWHAAZE00000007CDS6291876362918876-
GWHAAZE00000007CDS6291830162918455-
GWHAAZE00000007CDS6291765662917728-
GWHAAZE00000007CDS6291735862917548-
GWHAAZE00000007CDS6291687162916997-
GWHAAZE00000007CDS6291668262916759-
GWHAAZE00000007CDS6291598662916150-
GWHAAZE00000007CDS6291473062914900-
GWHAAZE00000007CDS6291452062914657-
GWHAAZE00000007CDS6291315062913293-
GWHAAZE00000007CDS6291286662912988-
GWHAAZE00000007CDS6291211862912276-
Transcript Sequence

Network for GWHGAAZE025541

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF11894.9Nup192311653.30E-08
PF11894.9Nup19263317601.10E-84
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14310NUP205, NUP192 RNA transport map03013

Gene Ontology

GO term OntologyName
GO:0005643cellular_componentnuclear pore

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf14.042
SRR3591706second leaf8.972
SRR3591707mature leaf8.720
SRR3591708Shoot apex15.465
SRR3591709Stem11.528
SRR3591710White floral bud5.827
SRR3591711White flower10.005
SRR3591712Green floral bud6.160
SRR3591713Yellow flower5.684
SRP173429 SRR8316895Juvenile bud stage 4.917
SRR8316896Juvenile bud stage 6.368
SRR8316897Juvenile bud stage 2.963
SRR8316894Third green stage 3.472
SRR8316900Third green stage 6.300
SRR8316901Third green stage 5.738
SRR8316898Complete white stage 0.947
SRR8316899Complete white stage 4.504
SRR8316903Complete white stage 2.687
SRR8316902Silver flowering stage1.770
SRR8316904Silver flowering stage2.855
SRR8316905Silver flowering stage1.242
SRR8316906Gold flowering stage 3.936
SRR8316907Gold flowering stage 3.666
SRR8316908Gold flowering stage 4.228
SRP132670SRR6706286Control3.847
SRR6706287Light intensity 50%4.231
SRR6706288Light intensity 20%5.166
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.595
CNS0095593Slightly white alabastrum(diploid) 22.543
CNS0095594Slightly white alabastrum(diploid) 32.258
CNS0095595Whole white alabastrum(diploid) 22.498
CNS0095596Whole white alabastrum(diploid) 32.077
CNS0095597Whole white alabastrum(diploid) 42.772
CNS0095598Silvery flower (diploied) 15.952
CNS0095599Silvery flower (diploied) 24.970
CNS0095600Silvery flower (diploied) 35.965
CNS0095601Golden flower (diploid) 14.866
CNS0095602Golden flower (diploid) 27.828
CNS0095603Golden flower (diploid) 37.192
CNS0095604Slightly white alabastrum(tetraploid) 13.794
CNS0095605Slightly white alabastrum(tetraploid) 22.101
CNS0095606Slightly white alabastrum(tetraploid) 39.064
CNS0095607Whole white alabastrum(tetraploid) 12.341
CNS0095608Whole white alabastrum(tetraploid) 22.128
CNS0095609Whole white alabastrum(tetraploid) 36.248
CNS0095610Silvery flower (tetraploid) 17.897
CNS0095611Silvery flower (tetraploid) 28.733
CNS0095612Silvery flower (tetraploid) 36.028
CNS0095613Golden flower (tetraploid) 12.540
CNS0095614Golden flower (tetraploid) 25.051
CNS0095615Golden flower (tetraploid) 33.682
CRA001975CRR073297Stem 15.984
CRR073298Stem 25.425
CRR073299Stem 33.690
CRR073300Leaf 14.918
CRR073301Leaf 23.937
CRR073302Leaf 32.768
CRR073303Juvenile bud 13.710
CRR073304Juvenile bud 22.182
CRR073305Juvenile bud 34.102
CRR073306Third green 10.638
CRR073307Third green 20.356
CRR073308Third green 30.789
CRR073309Second white 10.759
CRR073310Second white 21.867
CRR073311Second white 31.199
CRR073312Silver flowering 11.084
CRR073313Silver flowering 20.895
CRR073314Silver flowering 30.910
CRR073315Gold flowering 12.168
CRR073316Gold flowering 23.489
CRR073317Gold flowering 31.615
CRR073318Tawny withering 13.193
CRR073319Tawny withering 22.649
CRR073320Tawny withering 33.577