Detail information of GWHGAAZE025549


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002524469.10Protein AFR, putative [Ricinus communis]
COGYP_003324485.14E-10Kelch repeat-containing protein
Swissprottr|Q93W93|FBK22_ARATH0F-box/kelch-repeat protein At1g55270
trEMBLtr|B9SEQ0|B9SEQ0_RICCO0Protein AFR, putative {ECO:0000313|EMBL:EEF37909.1}
TAIR10AT1G55270.12E-177Galactose oxidase/kelch repeat superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene6309170063092881-
GWHAAZE00000007mRNA6309170063092881-
GWHAAZE00000007exon6309185863092881-
GWHAAZE00000007exon6309170063091827-
GWHAAZE00000007CDS6309185863092881-
GWHAAZE00000007CDS6309170063091827-
Transcript Sequence

Network for GWHGAAZE025549

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00646.34F-box31679.10E-06
PF01344.26Kelch_11682151.90E-14
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf21.721
SRR3591706second leaf12.893
SRR3591707mature leaf13.655
SRR3591708Shoot apex22.365
SRR3591709Stem25.085
SRR3591710White floral bud18.284
SRR3591711White flower23.587
SRR3591712Green floral bud21.382
SRR3591713Yellow flower9.490
SRP173429 SRR8316895Juvenile bud stage 9.953
SRR8316896Juvenile bud stage 12.569
SRR8316897Juvenile bud stage 5.075
SRR8316894Third green stage 7.175
SRR8316900Third green stage 19.656
SRR8316901Third green stage 15.729
SRR8316898Complete white stage 7.969
SRR8316899Complete white stage 30.056
SRR8316903Complete white stage 11.386
SRR8316902Silver flowering stage6.285
SRR8316904Silver flowering stage8.451
SRR8316905Silver flowering stage4.409
SRR8316906Gold flowering stage 13.613
SRR8316907Gold flowering stage 13.371
SRR8316908Gold flowering stage 13.467
SRP132670SRR6706286Control28.730
SRR6706287Light intensity 50%28.068
SRR6706288Light intensity 20%28.662
CNP0000432CNS0095592Slightly white alabastrum(diploid) 18.624
CNS0095593Slightly white alabastrum(diploid) 29.551
CNS0095594Slightly white alabastrum(diploid) 37.074
CNS0095595Whole white alabastrum(diploid) 29.383
CNS0095596Whole white alabastrum(diploid) 36.347
CNS0095597Whole white alabastrum(diploid) 47.595
CNS0095598Silvery flower (diploied) 110.904
CNS0095599Silvery flower (diploied) 26.548
CNS0095600Silvery flower (diploied) 314.800
CNS0095601Golden flower (diploid) 18.855
CNS0095602Golden flower (diploid) 212.466
CNS0095603Golden flower (diploid) 314.256
CNS0095604Slightly white alabastrum(tetraploid) 112.529
CNS0095605Slightly white alabastrum(tetraploid) 210.753
CNS0095606Slightly white alabastrum(tetraploid) 328.975
CNS0095607Whole white alabastrum(tetraploid) 16.739
CNS0095608Whole white alabastrum(tetraploid) 26.166
CNS0095609Whole white alabastrum(tetraploid) 316.768
CNS0095610Silvery flower (tetraploid) 117.478
CNS0095611Silvery flower (tetraploid) 214.813
CNS0095612Silvery flower (tetraploid) 329.528
CNS0095613Golden flower (tetraploid) 18.652
CNS0095614Golden flower (tetraploid) 214.400
CNS0095615Golden flower (tetraploid) 39.904
CRA001975CRR073297Stem 126.647
CRR073298Stem 228.692
CRR073299Stem 336.847
CRR073300Leaf 133.740
CRR073301Leaf 229.528
CRR073302Leaf 337.319
CRR073303Juvenile bud 130.163
CRR073304Juvenile bud 226.299
CRR073305Juvenile bud 335.228
CRR073306Third green 136.130
CRR073307Third green 232.303
CRR073308Third green 330.628
CRR073309Second white 125.261
CRR073310Second white 225.812
CRR073311Second white 318.207
CRR073312Silver flowering 113.961
CRR073313Silver flowering 211.453
CRR073314Silver flowering 311.620
CRR073315Gold flowering 119.840
CRR073316Gold flowering 229.023
CRR073317Gold flowering 329.881
CRR073318Tawny withering 133.639
CRR073319Tawny withering 222.361
CRR073320Tawny withering 331.574