Gene detail

Detail information of GWHGAAZE025551

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002285089.1	0	PREDICTED: mediator of RNA polymerase II transcription subunit 17 [Vitis vinifera]
Swissprot	tr\|F4K460\|MED17_ARATH	0	Mediator of RNA polymerase II transcription subunit 17
trEMBL	tr\|A5BHH4\|A5BHH4_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN63500.1}
TAIR10	AT5G20170.1	6E-177	RNA polymerase II transcription mediators

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	63118424	63130332	-
GWHAAZE00000007	mRNA	63118424	63130332	-
GWHAAZE00000007	exon	63130244	63130332	-
GWHAAZE00000007	exon	63129954	63130155	-
GWHAAZE00000007	exon	63128508	63128557	-
GWHAAZE00000007	exon	63127704	63127892	-
GWHAAZE00000007	exon	63124761	63124788	-
GWHAAZE00000007	exon	63123922	63124035	-
GWHAAZE00000007	exon	63123261	63123346	-
GWHAAZE00000007	exon	63122538	63122913	-
GWHAAZE00000007	exon	63121700	63122170	-
GWHAAZE00000007	exon	63120667	63121005	-
GWHAAZE00000007	exon	63118424	63118744	-
GWHAAZE00000007	CDS	63130244	63130332	-
GWHAAZE00000007	CDS	63129954	63130155	-
GWHAAZE00000007	CDS	63128508	63128557	-
GWHAAZE00000007	CDS	63127704	63127892	-
GWHAAZE00000007	CDS	63124761	63124788	-
GWHAAZE00000007	CDS	63123922	63124035	-
GWHAAZE00000007	CDS	63123261	63123346	-
GWHAAZE00000007	CDS	63122538	63122913	-
GWHAAZE00000007	CDS	63121700	63122170	-
GWHAAZE00000007	CDS	63120667	63121005	-
GWHAAZE00000007	CDS	63118424	63118744	-

Transcript Sequence
>GWHTAAZE025585 ATGGAAGGAAACTTGGACATATCAATAGATAAGCTCCCCATCAAGCGCTTGGAAGTCATTGAAGAACACGGAGCCGAAAGATTCCCTTCTGATGTTGGCTACGAGGAGAAGCGAGTTGACCTAATTCGGCGAATAGACTTTGCTTGGGCGGTGGAGAAAGATGATCCGAACAAGAAGCAGAAAAAGAGTACTTCTAAGGACACAGCAGCGCCATGGCAATGGCAAAGCGTGGTCGAGAACTTGCATTTGGCTCATCAAGAGCTCTCTGTCATTATTGATCTCATCAACACTGATGGAATTGGATCTTGTAAGTTGGTGCATGTACCGGAGCTTTTGGGGAGAACAAGTGATCATGTCTACTCTGCTCTATCTCTTTGGTCGATTGAGTGCGAGTGTGTTATCTCTGAGTTACCTTCTTTCTCTTCCATATCTGATGTAATAGGAATTCCATTGGGAGGTAGTCATATTGCCTTTTGGATCCCTGGAAAAAGGTTCCAGGAAATTAGATGGGAGGATGGCCAGTCTAGGAGGACATTCCCTGGGGGAGGGGTATATCAGGTGGAAGCCAACGATGCAGTTACAGTGGCCGGAATGACAAGGCCTAAGCAATTACCTAATGAACTTTTGTCTGACCTTGCTGTATCTACAGCAACAAAGTTACAGTGCTTCAGGAATCTTGGGAAATATTTTAAGCAATCTGCCAAAGCATTGGAACAGCAGGTTTCACGGGAAGCAAGATTCTATGGTGCTCTAATAAGACTGCAGCAAAACTGGAAAGTTAAACGGCATCGCATGGCTGTTTCTCCTGGCAACGAAGGCTTCTATATTGATCTATTTGACAATTCATTATATGATCCAACAACTGCCTTTCACGCACCTTCTGTATCAACTGTGCGTGTTGAGCATGACTCGGCTGGAATGCTGGCTGTGAATTTACCTCCAAATGCAACCCGCTCTTTGCAGTTTGGATTTCTCGGTGCACACTCTGACGAGCTTGACAAACAATCTAAAAGAATGAAAACCCATTCCTCTGTTTCTGAAGAAACAAAGAAAGAATCTGTGAGTGATGATGAACATCTTAAAGAAACGCATTCTGTCCTCTGTGAAGTTCATAGGGCAATATTTGATGAGCAGGTGTTTGATTTGGTGAATCGTGAAGCATTCAACCCATCTTTAGGTGTAAATGTAACTGGGATTCGAGAAAACCATTTGGAACTGAGCGTTGGTCAAGGAGCCTCTGTATTCATTTCACTCGTGCCATCTGGGCATGATGATGATGATCCAACAGTTGATAATGCAGGCACCAATAATTCAGAATCAGCACTTGTACCGATGGAAACATTCGATGGGTCAAATTTAGCAGAAGGGAAAAATTTCCTGGAAAAGAAGTCGGGTTGTCCTAATCGGATTAGTTGTGAAATTTATTTGCAACAAATATTTCATGAACATGTGTTTGTAAAAGCAAAGAACAGATCCATTTCTGCCGGTAAAACACCAGTTTCTGGTCAGCCAACAAAGGATGGGTTAAATCTGCTCGGTCATTTCTGTATGTCTCTATCTCACAGAATCTTTTCAAACAAAGTGCTCAATGAGCTGGAAAATCTGGTTAGCAGGGTACCATATGTACAGTTGATATCTCATCCGACTTGGCATTCTAGGACATCTTCATGGACACTCTGCATGAAAGTTCCTCAGTCTATTCTCCATGCAGGGTTATCCCAAAACAGGACATTGGACAAGAATGTAAAAAAGTCACAGTTTCGTACGAAAGTGGTGGTCAATGATGATTGCATCAATGTAGAAGGAGAAGGTGCTCCTAATGTAGTTGGCCTATTTAAAGGCAAGTCGGAGAACATATGCTCTATGAATAGATACGACTGTGACTTGGCCGATCTTCCAGAGATACTCCTGCAACAGGCATGCCACTATCTCTATAATTTTTCAGTTGCAAGCCAAGTTATTCGGTGGCTCCATGAGGAAGCACTGATGGTGGGAATCAAAGCAAACAGGGACTTTCTATGCTTGTCATTGGAGCTGGACCAGGGTGAAACACTGGGCCTGGTGGCACACGTGGACCCATATGACCCCCGAGGATGCATATCATGGTGGTTGGTGATGGACGACGGGTTCACAGAGGAACAACGCAAGCTTGAAGCAGATTTGTCTGATACCGAAACCCGTAAGTTCTTGGGTTACCTCTCTCTAGATGTTCTATATTCAATGTTGCTGGATTTGATTAGCTTGTGCAGTGGTAGCAGTTATTGA

Network for GWHGAAZE025551

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF10156.10	Med17	199	431	1.40E-06

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15133	MED17	Thyroid hormone signaling pathway	map04919

Gene Ontology

GO term	Ontology	Name
GO:0006357	biological_process	regulation of transcription by RNA polymerase II
GO:0016592	cellular_component	mediator complex
GO:0003712	molecular_function	transcription coregulator activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	9.056
	SRR3591706	second leaf	5.759
	SRR3591707	mature leaf	6.070
	SRR3591708	Shoot apex	9.817
	SRR3591709	Stem	10.481
	SRR3591710	White floral bud	13.478
	SRR3591711	White flower	16.730
	SRR3591712	Green floral bud	9.375
	SRR3591713	Yellow flower	15.976
SRP173429	SRR8316895	Juvenile bud stage	7.798
	SRR8316896	Juvenile bud stage	10.616
	SRR8316897	Juvenile bud stage	5.189
	SRR8316894	Third green stage	4.093
	SRR8316900	Third green stage	11.210
	SRR8316901	Third green stage	10.726
	SRR8316898	Complete white stage	5.929
	SRR8316899	Complete white stage	18.379
	SRR8316903	Complete white stage	10.203
	SRR8316902	Silver flowering stage	6.839
	SRR8316904	Silver flowering stage	10.541
	SRR8316905	Silver flowering stage	4.721
	SRR8316906	Gold flowering stage	20.160
	SRR8316907	Gold flowering stage	18.836
	SRR8316908	Gold flowering stage	16.204
SRP132670	SRR6706286	Control	9.209
	SRR6706287	Light intensity 50%	9.593
	SRR6706288	Light intensity 20%	10.213
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.941
	CNS0095593	Slightly white alabastrum(diploid) 2	6.391
	CNS0095594	Slightly white alabastrum(diploid) 3	6.344
	CNS0095595	Whole white alabastrum(diploid) 2	6.864
	CNS0095596	Whole white alabastrum(diploid) 3	5.412
	CNS0095597	Whole white alabastrum(diploid) 4	6.042
	CNS0095598	Silvery flower (diploied) 1	11.192
	CNS0095599	Silvery flower (diploied) 2	10.372
	CNS0095600	Silvery flower (diploied) 3	15.816
	CNS0095601	Golden flower (diploid) 1	12.145
	CNS0095602	Golden flower (diploid) 2	17.587
	CNS0095603	Golden flower (diploid) 3	18.172
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.219
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.820
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.508
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.823
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.432
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.687
	CNS0095610	Silvery flower (tetraploid) 1	15.062
	CNS0095611	Silvery flower (tetraploid) 2	15.039
	CNS0095612	Silvery flower (tetraploid) 3	13.269
	CNS0095613	Golden flower (tetraploid) 1	12.180
	CNS0095614	Golden flower (tetraploid) 2	13.061
	CNS0095615	Golden flower (tetraploid) 3	20.488
CRA001975	CRR073297	Stem 1	14.245
	CRR073298	Stem 2	13.334
	CRR073299	Stem 3	11.519
	CRR073300	Leaf 1	12.670
	CRR073301	Leaf 2	11.826
	CRR073302	Leaf 3	9.145
	CRR073303	Juvenile bud 1	10.944
	CRR073304	Juvenile bud 2	11.020
	CRR073305	Juvenile bud 3	11.386
	CRR073306	Third green 1	5.987
	CRR073307	Third green 2	6.368
	CRR073308	Third green 3	7.328
	CRR073309	Second white 1	12.094
	CRR073310	Second white 2	12.842
	CRR073311	Second white 3	14.647
	CRR073312	Silver flowering 1	13.662
	CRR073313	Silver flowering 2	8.451
	CRR073314	Silver flowering 3	12.539
	CRR073315	Gold flowering 1	7.662
	CRR073316	Gold flowering 2	14.056
	CRR073317	Gold flowering 3	7.347
	CRR073318	Tawny withering 1	9.247
	CRR073319	Tawny withering 2	8.565
	CRR073320	Tawny withering 3	9.232