Gene detail

Detail information of GWHGAAZE025558

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP10377.1	6.5693E-153	unnamed protein product [Coffea canephora]
COG	YP_003696359.1	7E-38	NAD(+) diphosphatase
Swissprot	tr\|Q94A82\|NUD19_ARATH	1E-136	Nudix hydrolase 19, chloroplastic (Precursor)
trEMBL	tr\|A0A068UPY8\|A0A068UPY8_COFCA	2E-153	Coffea canephora DH200=94 genomic scaffold, scaffold_45 {ECO:0000313\|EMBL:CDP10377.1}
TAIR10	AT5G20070.1	3E-111	nudix hydrolase homolog 19

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	63240229	63245868	-
GWHAAZE00000007	mRNA	63240229	63245868	-
GWHAAZE00000007	exon	63240229	63240396	-
GWHAAZE00000007	exon	63240988	63241092	-
GWHAAZE00000007	exon	63241170	63241310	-
GWHAAZE00000007	exon	63245311	63245868	-
GWHAAZE00000007	five_prime_UTR	63245803	63245868	-
GWHAAZE00000007	CDS	63245311	63245802	-
GWHAAZE00000007	CDS	63241170	63241310	-
GWHAAZE00000007	CDS	63240988	63241092	-
GWHAAZE00000007	CDS	63240229	63240396	-

Transcript Sequence
>GWHTAAZE025592 CATTTTCACCCCTCTCTGAAAACCCTAATTCCAAAAATCCCCAATTCTCCCCCTGACCTCTTCCTCATGTCTATACCCCTGAAATCCCATGCCTTTGCAGGCAACCCACTAAGATCCAACAAAACCCCAAAATCAAATGATCCATACTCACTCACCTCTGCCCTTGAAACCCTCAAAACCCTAATATTGGATCAAACCCATGAACCCTCTGGCCCTAATTTCAAGGTCCTGCCCTTGAGAAAGGGCAGGCCATTGGTGGGTACAATTGACGGTAATTCAATAGCCCCAAACTGGCATCTGGGTTGGTTGGGTTTTGGTGATTTTAAGGTTTTGTTGGAAAATTCTGAGGTTACTTTGGGGGAAGATTCTTTGGTTTATTTGGGTTCAAAGTCCGAGGAGGAAGAGGTGGTTTATTGGGCAATTGATGTGTCTAATGATGATAGTTTGGTGGATAAGTTTGGGAGTAAGCAGCTTTGCTTTGTGGAGCTGAGGACTTTGATGGTTGCCACTGATTGGGGTGATGAAAGAGCTATGGGTGAACTTGCTGTTGCTGGTCATGCTAGAGCAATATTGGAATGGCATCTCACATCCCGTTTTTGTGGTCATTGTGGAGAGGAAACAGTCCCCATTGAAGCTGGGAGACGGAAGAAATGCTCAAACGAGTTGTGCAAAAAGAGAGTTTACCCTCGAGTTGATCCGGTTGTCATTATGCTAGTCATTGATAAAGAAAACGACTGTGCACTTTTAAGTAAACAGTCAAGATTTGTGCCCCGAATGTGGAGTTGCCTTGCTGGTTTTATAGAGCCAGGAGAAAGCTTGGAAGAGGCAGTGAGGAGAGAAACATGGGAGGAGACTGGCATTGAAGTTGGCGAAGTTATCTATCATAGCTCTCAACCATGGCCTGGTATTGCTTCATTTTTCCGTGTGTATTTCACTTACTTTTACTATGGTGTGTTACAGGGACTGAGGGCA

Network for GWHGAAZE025558

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF09296.12	NUDIX-like	84	171	2.40E-09
PF09297.12	zf-NADH-PPase	174	206	4.80E-07
PF00293.29	NUDIX	211	289	1.10E-13

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03426	E3.6.1.22, NUDT12, nudC	Metabolic pathways	map01100
		Nicotinate and nicotinamide metabolism	map00760
		Peroxisome	map04146

Gene Ontology

GO term	Ontology	Name
GO:0016787	molecular_function	hydrolase activity
GO:0046872	molecular_function	metal ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	59.892
	SRR3591706	second leaf	39.639
	SRR3591707	mature leaf	40.083
	SRR3591708	Shoot apex	49.364
	SRR3591709	Stem	51.840
	SRR3591710	White floral bud	54.697
	SRR3591711	White flower	63.585
	SRR3591712	Green floral bud	37.323
	SRR3591713	Yellow flower	65.012
SRP173429	SRR8316895	Juvenile bud stage	40.693
	SRR8316896	Juvenile bud stage	56.134
	SRR8316897	Juvenile bud stage	29.309
	SRR8316894	Third green stage	25.501
	SRR8316900	Third green stage	76.357
	SRR8316901	Third green stage	63.127
	SRR8316898	Complete white stage	36.957
	SRR8316899	Complete white stage	81.489
	SRR8316903	Complete white stage	65.463
	SRR8316902	Silver flowering stage	48.579
	SRR8316904	Silver flowering stage	66.116
	SRR8316905	Silver flowering stage	34.833
	SRR8316906	Gold flowering stage	129.691
	SRR8316907	Gold flowering stage	101.474
	SRR8316908	Gold flowering stage	128.220
SRP132670	SRR6706286	Control	87.345
	SRR6706287	Light intensity 50%	84.701
	SRR6706288	Light intensity 20%	88.898
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	28.303
	CNS0095593	Slightly white alabastrum(diploid) 2	28.382
	CNS0095594	Slightly white alabastrum(diploid) 3	30.008
	CNS0095595	Whole white alabastrum(diploid) 2	26.695
	CNS0095596	Whole white alabastrum(diploid) 3	25.641
	CNS0095597	Whole white alabastrum(diploid) 4	27.362
	CNS0095598	Silvery flower (diploied) 1	36.656
	CNS0095599	Silvery flower (diploied) 2	28.067
	CNS0095600	Silvery flower (diploied) 3	63.259
	CNS0095601	Golden flower (diploid) 1	31.331
	CNS0095602	Golden flower (diploid) 2	59.833
	CNS0095603	Golden flower (diploid) 3	61.084
	CNS0095604	Slightly white alabastrum(tetraploid) 1	36.359
	CNS0095605	Slightly white alabastrum(tetraploid) 2	35.971
	CNS0095606	Slightly white alabastrum(tetraploid) 3	65.300
	CNS0095607	Whole white alabastrum(tetraploid) 1	29.880
	CNS0095608	Whole white alabastrum(tetraploid) 2	22.188
	CNS0095609	Whole white alabastrum(tetraploid) 3	50.020
	CNS0095610	Silvery flower (tetraploid) 1	76.139
	CNS0095611	Silvery flower (tetraploid) 2	70.650
	CNS0095612	Silvery flower (tetraploid) 3	83.660
	CNS0095613	Golden flower (tetraploid) 1	47.208
	CNS0095614	Golden flower (tetraploid) 2	70.703
	CNS0095615	Golden flower (tetraploid) 3	76.401
CRA001975	CRR073297	Stem 1	74.716
	CRR073298	Stem 2	76.771
	CRR073299	Stem 3	56.004
	CRR073300	Leaf 1	82.380
	CRR073301	Leaf 2	78.015
	CRR073302	Leaf 3	69.660
	CRR073303	Juvenile bud 1	72.732
	CRR073304	Juvenile bud 2	67.549
	CRR073305	Juvenile bud 3	66.626
	CRR073306	Third green 1	73.646
	CRR073307	Third green 2	56.376
	CRR073308	Third green 3	64.428
	CRR073309	Second white 1	65.772
	CRR073310	Second white 2	61.187
	CRR073311	Second white 3	70.159
	CRR073312	Silver flowering 1	56.100
	CRR073313	Silver flowering 2	55.727
	CRR073314	Silver flowering 3	66.740
	CRR073315	Gold flowering 1	33.142
	CRR073316	Gold flowering 2	45.783
	CRR073317	Gold flowering 3	30.020
	CRR073318	Tawny withering 1	58.981
	CRR073319	Tawny withering 2	38.277
	CRR073320	Tawny withering 3	50.688