Gene detail

Detail information of GWHGAAZE025559

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002285044.1	0	PREDICTED: protein kinase PINOID 2 [Vitis vinifera]
COG	YP_828765.1	9E-19	serine/threonine protein kinase
Swissprot	tr\|Q64FQ2\|PID2_ARATH	0	Protein kinase PINOID 2
trEMBL	tr\|F6HH71\|F6HH71_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB51567.1}
TAIR10	AT2G26700.1	2E-133	AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	63280192	63283202	-
GWHAAZE00000007	mRNA	63280192	63283202	-
GWHAAZE00000007	exon	63282670	63283202	-
GWHAAZE00000007	exon	63280192	63281035	-
GWHAAZE00000007	CDS	63282670	63283202	-
GWHAAZE00000007	CDS	63280192	63281035	-

Transcript Sequence
>GWHTAAZE025593 ATGTCAACCATGACCCGATACGAATCTGACTACGACACAAACAGCACCACCTCCTCCTCCCTCACCGTGCTGGAATCCTGCCGAAGCTCGGTCTCCGTTTGCTCCTCTGTTGACTCCCACAAGCCCCACAAGGCTAACCAGGCAGGTTGGGAAGCCATGAAGCGGCTCAGAGCAGCCACTGGGCTGGTGGGGCTCCACCACTTCCGACTCCTCCGCCGCTTAGGAAGTGGCGACATAGGTACCGTGTACCTATGCCAGATGCGGGCCCAGGGCAGTACTGCTACTGGCCAGCAGTGTCTTTACGCAATGAAAGTGGTGGATAGGGAGGCCTTGGAATTAAGGAACAAGCTGGTGAGGGCTGAGGTTGAGAGAGACATTTTGGGTATTTTGGATCACCCATTTTTGCCGACTTTATACGCAGAGTTTGGTGCCTCGCACTACTCGTGTTTGGTTATGGAGTTTTGTCCCGGCGGGGATTTGCATGCTGCGCGGCAACGGCAGCCGGCGAAGCGGTTTAGTATTTCTTCCGCTAAGTTTTATGCAGCTGAAACATTATTAGCCCTAGAATACCTCCACATGATGGGTATAGTCTACCGAGACCTAAAGCCTGAAAATGTTCTCGTTCGAGAAGACGGCCACATCATGCTCTCAGATTTTGACCTATCCCTCAAATGCGACGTTATTCCGAGGTTGATAAGATCGAAGCCCCAGCCACAACCTGCTACCAAGACGCAAAAGACCACTATGCCGTCATGTTCAATCCCCATCCAACCTGTCCTCTCTTGCTTATTATTATCAAAATCCAGAAAAAACTTTAAAAGGGCACAAAAATTCGAATCACCCAATCCCGAATTAGTCGCGGAGCCAATGGGCGCACGGTCCAAATCGTTCGTCGGGACCCATGAGTACCTGGCGCCGGAGGTGATCACGGGGCAGGGCCACGGGAGTGCGGTGGATTGGTGGACCCTAGGGGTGTTCTTGTATGAGTTGTTGTATGGGATTACACCCTTTAAAGGGGAGAACAATGAAAAGACACTAATCAACATTCTAAAAAAGCCACTCACATTCCCTAGGATAGGAATAAGTAGTTGCAATGAATATGAGGAAATGGTCATTAAAGTACAAGATCTTATAAGTAAATTGTTAGTGAAGAATCCAAAGAAGAGAATTGGGAGCTTAAAAGGGGCTGTGGAAATAAAGAGTCATGATTTCTTTAAGGGTGTGAATTGGGCTTTGATTAGGTCAATTAGGCCACCAGAGGTACCTAGTGATGTGAAGAAGATTAGGAATAAGAATAGTGTGGTGGTACCAAAGTTGAGCAAGAAAGAGAGAGATGCACCTTATCAAATCCCCAATCAATATTTTGATTACTTTTGA

Network for GWHGAAZE025559

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	69	224	8.70E-31
PF00069.26	Pkinase	294	405	5.20E-22

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	AGC_RSK-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.295
	SRR3591706	second leaf	1.351
	SRR3591707	mature leaf	0.186
	SRR3591708	Shoot apex	3.956
	SRR3591709	Stem	0.652
	SRR3591710	White floral bud	0.258
	SRR3591711	White flower	0.086
	SRR3591712	Green floral bud	0.216
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.932
	SRR8316896	Juvenile bud stage	1.656
	SRR8316897	Juvenile bud stage	0.076
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.182
	SRR8316901	Third green stage	0.100
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.380
	SRR8316903	Complete white stage	0.074
	SRR8316902	Silver flowering stage	0.040
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.050
SRP132670	SRR6706286	Control	0.170
	SRR6706287	Light intensity 50%	0.073
	SRR6706288	Light intensity 20%	0.168
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.236
	CNS0095593	Slightly white alabastrum(diploid) 2	0.705
	CNS0095594	Slightly white alabastrum(diploid) 3	0.803
	CNS0095595	Whole white alabastrum(diploid) 2	0.049
	CNS0095596	Whole white alabastrum(diploid) 3	0.204
	CNS0095597	Whole white alabastrum(diploid) 4	0.193
	CNS0095598	Silvery flower (diploied) 1	0.554
	CNS0095599	Silvery flower (diploied) 2	0.320
	CNS0095600	Silvery flower (diploied) 3	0.089
	CNS0095601	Golden flower (diploid) 1	0.824
	CNS0095602	Golden flower (diploid) 2	0.147
	CNS0095603	Golden flower (diploid) 3	0.314
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.163
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.532
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.356
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.078
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.256
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.074
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.055
	CNS0095612	Silvery flower (tetraploid) 3	0.150
	CNS0095613	Golden flower (tetraploid) 1	0.082
	CNS0095614	Golden flower (tetraploid) 2	0.057
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.515
	CRR073298	Stem 2	0.650
	CRR073299	Stem 3	0.176
	CRR073300	Leaf 1	0.450
	CRR073301	Leaf 2	0.181
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.037
	CRR073304	Juvenile bud 2	0.116
	CRR073305	Juvenile bud 3	0.073
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.097
	CRR073308	Third green 3	0.619
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	2.407
	CRR073316	Gold flowering 2	1.386
	CRR073317	Gold flowering 3	1.603
	CRR073318	Tawny withering 1	0.445
	CRR073319	Tawny withering 2	0.032
	CRR073320	Tawny withering 3	0.535