Gene detail

Detail information of GWHGAAZE025567

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009619489.1	0	PREDICTED: potassium channel AKT1-like [Nicotiana tomentosiformis]
COG	YP_724331.1	5E-43	cyclic nucleotide-binding protein
Swissprot	tr\|Q38998\|AKT1_ARATH	0	Potassium channel AKT1
trEMBL	tr\|D7TBW5\|D7TBW5_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI28150.3}
TAIR10	AT2G26650.1	0	K+ transporter 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	63543366	63551466	+
GWHAAZE00000007	mRNA	63543366	63551466	+
GWHAAZE00000007	exon	63543366	63543571	+
GWHAAZE00000007	exon	63544686	63545051	+
GWHAAZE00000007	exon	63545394	63545451	+
GWHAAZE00000007	exon	63546102	63546419	+
GWHAAZE00000007	exon	63546774	63547019	+
GWHAAZE00000007	exon	63547142	63547240	+
GWHAAZE00000007	exon	63547606	63547638	+
GWHAAZE00000007	exon	63547834	63548019	+
GWHAAZE00000007	exon	63548771	63548965	+
GWHAAZE00000007	exon	63549059	63549134	+
GWHAAZE00000007	exon	63550571	63551466	+
GWHAAZE00000007	CDS	63543366	63543571	+
GWHAAZE00000007	CDS	63544686	63545051	+
GWHAAZE00000007	CDS	63545394	63545451	+
GWHAAZE00000007	CDS	63546102	63546419	+
GWHAAZE00000007	CDS	63546774	63547019	+
GWHAAZE00000007	CDS	63547142	63547240	+
GWHAAZE00000007	CDS	63547606	63547638	+
GWHAAZE00000007	CDS	63547834	63548019	+
GWHAAZE00000007	CDS	63548771	63548965	+
GWHAAZE00000007	CDS	63549059	63549134	+
GWHAAZE00000007	CDS	63550571	63551466	+

Transcript Sequence
>GWHTAAZE025601 ATGGCGACTGCGATGGCGGATATTTGTAACAATAAAGGAGTATTTAGGGTTTCAATGTGTGGGGGTGCACAAGAGATAGAACAGATGTCGAGAGACGGAAGCCATTTCAGTCTCTCCACAGGTATTCTTCCTTCTCTCGGTGCTCGTAGTAATCGCAGAGTCAAGCTCCGACCATTCATCCTTTCTCCTTACGATCCCCGTTACAGGGTATGGGAGGGATTTCTGGTTATATTAGTCGTATATACTGCATGGGTCTCTCCCTTTGAATTTGGATTTCTCAACAAGCCAGAAGGACCACTATCCATCACCGATAACGTAGTCAATGGATTTTTTGGCATCGATATTATTCTCACCTTCTTTGTAGCGTACCTCGATAGAGGCACCTATCTTCTCGTTGATGACCGCAAGAAGATAGCTTGGAGATATATTAGCACTTGGCTCACATTAGATGTCATTTCCTCAATCCCTTCTGAACTTGCTCGGAAGATATCCCCAAGGCCCTTGCGTATGTATGGCTTGTTCAACATGCTTAGGCTATGGCGTCTTCGTAGAGTTAGTGCCATGTTTGCTCGGTTGGAGAAAGATAGGGACTTCAATTACTTCTGGGTTCGGTGCGCGAAACTTCTTTGTGTGACCCTTTTTGCGGTTCATTGTGCGGGGTGCTTCTATTATCTACTTGCGGCTCATTATCCTCATCCAGATAAGACTTGGATCGGGGCAAATATGCCCAACTTCCACCAGGAAAGCCTGTGGATCCGGTATGTAACATCAATGTACTGGTCCATCACTACCCTCACAACCGTTGGGTACGGAGACTTACATGCACAAAACACAAGGGAGATGACCTTCGTCATATTCTATATGCTCTTCAATCTGGGTTTGACTTCATACTTGATTGGAAATATGACTAACCTGGTTGTTCATGGCACTAGTAAAACCCGACTATTTAGGGATACCATTCAAGCCGCATCTAGTTTTGCGCTAAGGAATCAATTGCCGCCACGCTTGCAAGATCAGATGCTTGCACACTTGTGCTTAAAGTTTAGGACAGACTCAGAGGGGCTTCAGCAGCAAGAGACTCTTGATTCCCTTCCAAAAGCAATCCGTTCGAGCATTTCTCATTTCCTTTTCTACTCTCTTGTCGATAAGGTTTACTTGTTTCGTGGAGTTTCAAATGACTTGCTTTTCCAGCTGGTTTCGGAGATGAAAGCTGAATATTTCCCCCCCAAGGAAGATGTCATTTTGCAAAATGAAGCACCCACGGATTTCTACATACTTGTTACAGGAGCGGTGGAATTGCTGGTTCTGAATAATGGAGCTGAACAAGTTGTTGGAGAGGCTAAAACTGGGGAACTTTGTGGGGAGATTGGGGTTCTGTGTTACAGGCCTCAGCTCTTTACGGTGCGGACCAAAAGATTAAGCCAGCTTTTACGGTTGAATCGTACCAGTTTTTTGAACATTGTGCAATCCAATGTTGGAGATGGGACCATTATAATGAACAACCTCCTCCAGCATTTAAAAGAGTTGAATGACCCGATTATGGAGGGAGTTTTGCTAGAGACAGAGAACATGCTGGCTTGCGGTAGACTGGACCTACCTCTTAGCTTATGTTTTGCTACTCTTAGAGGGGATGACTTACTGTTGCACCAATTGTTGAGGCGCGGCCTGGATCCTAATGAATCCGACAACAATGGAAGGACAGCTCTGCACATTGCTGCGTCCAAAGGAAATGAGAACTGCGCGCTTCTCCTGCTGGATTACGGGGCAGATGCGAATAGCAGAGATTCAGAAGGGAATATTCCGCTGTGGGAGGCCATACTGGCTAACCGCGAACCAGTGATCAAATTACTGACAGATAACGGAGCCACCATATCATCTGGGGACGTGGGCAAATTTGCTTGCATATCCGCCGAGCAAAAGAAGCTCGAATTGTTAAAGGAAATTCTTCGGTATGGAGGGGACATCATGCTTCCCAATGGCAATGGGTCCACGGCTCTCCACGTCGCGGTTTGTGAAGGCAACACGGAGATGGTCAAGTTCCTTTTGGACCGAGGAGCCAGTGTTGATAAAGTGGACGACCATGGTTGGACCCCTAGGGACCTAGCGGACCAACAAGGTCATGAAGACATTAAAACCATTTTCCAGTCCATGAAAGTTGAACCCGAGAAAATTGTCAAAACTCAATCTGGTGTGGTATCCCAGATGGAGCACCACGGGGTCCGTTTCCTAGAGAGGTTTAATGGTGAGCCTAGTGTCCTAAATACAAACAGGGAAAAAGCAACCCCATCGACGGAGGAGTCATTAGGGCACCCCCGCCCTAGACGCAGGGCTAGTAACTTCCACAATTCGCTATTTGGTATCTTATCGGCTACCCAAAATGGGGAAAATGAGTTGCTCTTAGCCGCGAATCAAACTAAGTACAATGGGAATGCTAGAGTGACGGTTAGTTGCCACAAAAAGGGGGACGAAGCAGGGAAACTTGTGCTACTTCCGACAACCTTGGAGCAATTACGGGAGATCGGTGCTAGAAAGTTGGGGTTCATGCCCACTAAGGTTTTGAGCAAAGAGGGGGCTGAGATTGATGATATAGAGCTTATTAGGGATGGTGACCATCTAATTTTTGTTAGTGATGGTACCATTGAAGAATCATCTCCCCAAAATGACGGAAGTTTGAGATAA

Network for GWHGAAZE025567

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00520.32	Ion_trans	69	312	4.40E-37
PF00027.30	cNMP_binding	406	491	1.70E-14
PF12796.8	Ank_2	536	625	8.60E-13
PF12796.8	Ank_2	636	714	3.30E-10
PF11834.9	KHA	812	874	2.20E-23

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006811	biological_process	ion transport
GO:0055085	biological_process	transmembrane transport
GO:0006813	biological_process	potassium ion transport
GO:0016020	cellular_component	membrane
GO:0005515	molecular_function	protein binding
GO:0005216	molecular_function	ion channel activity
GO:0005249	molecular_function	voltage-gated potassium channel activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.545
	SRR3591706	second leaf	0.621
	SRR3591707	mature leaf	0.551
	SRR3591708	Shoot apex	1.294
	SRR3591709	Stem	0.704
	SRR3591710	White floral bud	1.280
	SRR3591711	White flower	1.288
	SRR3591712	Green floral bud	0.581
	SRR3591713	Yellow flower	0.786
SRP173429	SRR8316895	Juvenile bud stage	0.664
	SRR8316896	Juvenile bud stage	0.884
	SRR8316897	Juvenile bud stage	0.087
	SRR8316894	Third green stage	0.308
	SRR8316900	Third green stage	0.581
	SRR8316901	Third green stage	0.786
	SRR8316898	Complete white stage	0.208
	SRR8316899	Complete white stage	0.761
	SRR8316903	Complete white stage	0.337
	SRR8316902	Silver flowering stage	0.273
	SRR8316904	Silver flowering stage	0.410
	SRR8316905	Silver flowering stage	0.129
	SRR8316906	Gold flowering stage	0.613
	SRR8316907	Gold flowering stage	0.780
	SRR8316908	Gold flowering stage	0.607
SRP132670	SRR6706286	Control	1.055
	SRR6706287	Light intensity 50%	0.964
	SRR6706288	Light intensity 20%	0.949
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.856
	CNS0095593	Slightly white alabastrum(diploid) 2	0.517
	CNS0095594	Slightly white alabastrum(diploid) 3	0.458
	CNS0095595	Whole white alabastrum(diploid) 2	0.803
	CNS0095596	Whole white alabastrum(diploid) 3	0.473
	CNS0095597	Whole white alabastrum(diploid) 4	0.815
	CNS0095598	Silvery flower (diploied) 1	0.852
	CNS0095599	Silvery flower (diploied) 2	0.526
	CNS0095600	Silvery flower (diploied) 3	0.455
	CNS0095601	Golden flower (diploid) 1	0.590
	CNS0095602	Golden flower (diploid) 2	0.695
	CNS0095603	Golden flower (diploid) 3	0.910
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.286
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.408
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.345
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.074
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.136
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.267
	CNS0095610	Silvery flower (tetraploid) 1	0.101
	CNS0095611	Silvery flower (tetraploid) 2	0.380
	CNS0095612	Silvery flower (tetraploid) 3	0.151
	CNS0095613	Golden flower (tetraploid) 1	0.193
	CNS0095614	Golden flower (tetraploid) 2	0.219
	CNS0095615	Golden flower (tetraploid) 3	0.112
CRA001975	CRR073297	Stem 1	1.140
	CRR073298	Stem 2	0.855
	CRR073299	Stem 3	0.762
	CRR073300	Leaf 1	0.633
	CRR073301	Leaf 2	0.724
	CRR073302	Leaf 3	0.773
	CRR073303	Juvenile bud 1	0.863
	CRR073304	Juvenile bud 2	0.659
	CRR073305	Juvenile bud 3	0.553
	CRR073306	Third green 1	0.334
	CRR073307	Third green 2	0.017
	CRR073308	Third green 3	0.342
	CRR073309	Second white 1	0.228
	CRR073310	Second white 2	0.338
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.277
	CRR073313	Silver flowering 2	0.260
	CRR073314	Silver flowering 3	0.109
	CRR073315	Gold flowering 1	0.596
	CRR073316	Gold flowering 2	1.686
	CRR073317	Gold flowering 3	1.689
	CRR073318	Tawny withering 1	0.154
	CRR073319	Tawny withering 2	0.362
	CRR073320	Tawny withering 3	0.199