Gene detail

Detail information of GWHGAAZE025584

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004498639.1	4.1523E-174	PREDICTED: transcriptional corepressor LEUNIG-like isoform X2 [Cicer arietinum]
COG	YP_007092635.1	3E-21	WD-40 repeat-containing protein
Swissprot	tr\|Q9FUY2\|LEUNG_ARATH	2E-149	Transcriptional corepressor LEUNIG
trEMBL	tr\|I1M9M2\|I1M9M2_SOYBN	3E-168	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA14G16040.1}
TAIR10	AT4G32551.1	6E-119	LisH dimerisation motif;WD40/YVTN repeat-like-containing domain

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	63869546	63879680	+
GWHAAZE00000007	mRNA	63869546	63879680	+
GWHAAZE00000007	exon	63869546	63869550	+
GWHAAZE00000007	exon	63869682	63869779	+
GWHAAZE00000007	exon	63869894	63870009	+
GWHAAZE00000007	exon	63871908	63872264	+
GWHAAZE00000007	exon	63872338	63872412	+
GWHAAZE00000007	exon	63872542	63872611	+
GWHAAZE00000007	exon	63873240	63873303	+
GWHAAZE00000007	exon	63874558	63874861	+
GWHAAZE00000007	exon	63875372	63875479	+
GWHAAZE00000007	exon	63876213	63876452	+
GWHAAZE00000007	exon	63877092	63877115	+
GWHAAZE00000007	exon	63877230	63877317	+
GWHAAZE00000007	exon	63877400	63877503	+
GWHAAZE00000007	exon	63878063	63878212	+
GWHAAZE00000007	exon	63878569	63878724	+
GWHAAZE00000007	exon	63878989	63879108	+
GWHAAZE00000007	exon	63879462	63879680	+
GWHAAZE00000007	CDS	63869546	63869550	+
GWHAAZE00000007	CDS	63869682	63869779	+
GWHAAZE00000007	CDS	63869894	63870009	+
GWHAAZE00000007	CDS	63871908	63872264	+
GWHAAZE00000007	CDS	63872338	63872412	+
GWHAAZE00000007	CDS	63872542	63872611	+
GWHAAZE00000007	CDS	63873240	63873303	+
GWHAAZE00000007	CDS	63874558	63874861	+
GWHAAZE00000007	CDS	63875372	63875479	+
GWHAAZE00000007	CDS	63876213	63876452	+
GWHAAZE00000007	CDS	63877092	63877115	+
GWHAAZE00000007	CDS	63877230	63877317	+
GWHAAZE00000007	CDS	63877400	63877503	+
GWHAAZE00000007	CDS	63878063	63878212	+
GWHAAZE00000007	CDS	63878569	63878724	+
GWHAAZE00000007	CDS	63878989	63879108	+
GWHAAZE00000007	CDS	63879462	63879680	+

Transcript Sequence
>GWHTAAZE025618 ATGAGCTTGGATGTTTATATACATGATTATCTTGTGAAGAGGAGGTGTAATGCTGCTGCAGAGGCATTTCAAGCAGAAGCAGAAGTATCCACCAACCAGAATGTCATAGAAGCTCCTGGTGGTTTTCTCTTTGAATGGTGGTCAGTCTTTTGGGATACATTTATTGCTAGGTACAAGCGCCAGGCCGCTGTTGAATCTAATAACCAGGCGAGTTTTGTGCAGCAGTGCCAATGGCAAATTCAGATGCTAAGGCAGATTCAGCAGCAGAGAGAAGAAGAGACTCGACAGCAAATCGGCTCTCCTCATCACTCTTTTGCGAGGCAAAACTCCCAGAATTTGAATTCTTTGGATGCTGTGGCCCCCATTTTGGATTCCAATTATGCCTCGATATTGAAAGCAGTGGGGCTTGGAGGCCAGACTTCGAGGTAAAAATATGCACAAGATGAGATGTTACCTCATGATTGGGTGAAGAGCAGGTCCTAATGCATGTAGTGGTCCCACCTACACTTATCATTCAATCATGAGGTGACATGTCCTTGATTGTAAAACTTTTTGTGCGCAGAACTACTTCTCTATGCATACACTGCATGGTGCTCCTGGAGGTACTTCAAGAAACCACCGTCCAATGAAAAGTCAGCAGCAAATTCTAGTGACGTAAATTCACATCAGACGGCGAACCTCACTGCCACTGGTGCCGATGGATCGATGATTAGAATTCATGGATCAAATCAAGGGGTAAACAATGTGCCTTTGAAGGGATGGCCACTTTTGGTAAGTGTTACAATGGAATGGATCACTTTCGAACTGGACTTGTTCGTCCGAAAACCTGCAATGCAGTCCCCTCAATCATTCCATCAACTTCAATTCCAACAACAACAATATACTCTTCAAACACAGCAAAGTATAGCATCTGTATCTACCAGCGATTTTGAGGGGACAAAATTGAAAATGCTTCTTAATAATCAGAATACAAGTATCGGGAAGGATGGTCAATCAAATTCTGTTGGTGATATAATTTTTGGTGATGGATCAACGGTTCAAGCTAGTCTCCCTGTTTTGTCTATTTTGGATATAGAGACGCTAATGAAGCAACAAATGCAGAACAGCAATGAGCAACAACATCCACAAAGGACTCTTCTTGGCCGACAGCTATCTTTGGATGCTAGCATGTCAAACACCTCTAGAGGAATTGATCAGGCTCCAAAGAATCAAAGTAGGCAAAAGAGAAAGCAGCCGATGTCTTATTCAGGTCATGCCACTAGCTCAGTAAGTGCAAACACCACTGGACCATCCCTGAGTTCAGCACCCTCTACCCCCTCAACGCACACAATAGACGTAATATCTTTGCCGACATTTCCCCAAAATGACGCTTCTTCTAAAGCTTCATGTTTGCTTGGCAATGGTAGTGTGGCGGCAATCGTATCAGCAAATCAGTTGGTTTATACTTTTCTTTCTTTCAAGGCTAATATGGATTGTTTTTTGGACAATGGATCATTTGATGATAATGTGGAGTCATTCTTATCTAGTGATGATGCAGACCCTGGTGAAGGTTTCACATTCTCGGAAATCGGGAGTATTCATACTAGTGCGGTTGATTGTTGCGACTTCTCATCGGATGGAAAGCTGCTTGTTACCGGTGGAAATGATAAAAAGGCTAAATTATGGTACACAGATTCACGAGAACAAAAGGCTATACTTGAAGAACATTTTCATAAAATAACGGATACCCGTTTTAGCCCAACCATGCCATGGCTTGCTACGTCTTCGCTCGACAAAATTGTCCGTGTTTGGGATGTTGAAAATCCAGGCAATTCGATTCGAACTTTTAGTGGGCATCCAGCCCCTGTTATCTCACTAGACTTTCACCCGAAAAAAGGAGACCTGATCTGCTCTTGTGATGAAGTTAGCGAGATTCGATACTGGAGCGTTAAAAGTGGTGGCTGTGCTGGAGTTTCAAAGGGTGGTGCATCTCAAGTGAGGTTTCAACCTAGTCTTGGAAGGTTTCTTGCCGCTGTTGTAGGAGGTGGTGTATCGATAGTAGATGTACAGACGGCACAAACTTGTGGAAACCAATTGATTGTTCATGCACTAAATGTCCAGTCTGTCTGCTGGGATTCTTCGGGAGACCGACTGGCATCAGTACATGACGATTCTGTTAGAATCTGGAAAGTTGGGTCTGGGGCTGAAAGGAAATGCATTCACGAGTTAACTATCGCTGGAAAAAGATTCCGCAGTTGCATTTTCCATCCCCGTTACTGTTCTCTGTTGGTCATCGGCTGCTATGAGGCAAGTCAATGA

Network for GWHGAAZE025584

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	522	550	0.00045
PF00400.33	WD40	559	593	4.80E-05
PF00400.33	WD40	685	718	0.0025

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	LUG
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.491
	SRR3591706	second leaf	2.971
	SRR3591707	mature leaf	1.272
	SRR3591708	Shoot apex	4.403
	SRR3591709	Stem	0.405
	SRR3591710	White floral bud	7.817
	SRR3591711	White flower	7.330
	SRR3591712	Green floral bud	3.192
	SRR3591713	Yellow flower	2.311
SRP173429	SRR8316895	Juvenile bud stage	3.456
	SRR8316896	Juvenile bud stage	4.841
	SRR8316897	Juvenile bud stage	3.203
	SRR8316894	Third green stage	2.131
	SRR8316900	Third green stage	4.554
	SRR8316901	Third green stage	5.012
	SRR8316898	Complete white stage	0.578
	SRR8316899	Complete white stage	4.742
	SRR8316903	Complete white stage	1.178
	SRR8316902	Silver flowering stage	0.476
	SRR8316904	Silver flowering stage	0.679
	SRR8316905	Silver flowering stage	0.184
	SRR8316906	Gold flowering stage	1.502
	SRR8316907	Gold flowering stage	1.427
	SRR8316908	Gold flowering stage	1.114
SRP132670	SRR6706286	Control	4.694
	SRR6706287	Light intensity 50%	5.104
	SRR6706288	Light intensity 20%	6.585
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.885
	CNS0095593	Slightly white alabastrum(diploid) 2	2.465
	CNS0095594	Slightly white alabastrum(diploid) 3	1.847
	CNS0095595	Whole white alabastrum(diploid) 2	1.872
	CNS0095596	Whole white alabastrum(diploid) 3	0.909
	CNS0095597	Whole white alabastrum(diploid) 4	2.079
	CNS0095598	Silvery flower (diploied) 1	4.294
	CNS0095599	Silvery flower (diploied) 2	3.705
	CNS0095600	Silvery flower (diploied) 3	2.768
	CNS0095601	Golden flower (diploid) 1	3.982
	CNS0095602	Golden flower (diploid) 2	3.933
	CNS0095603	Golden flower (diploid) 3	4.151
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.502
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.060
	CNS0095606	Slightly white alabastrum(tetraploid) 3	13.137
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.164
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.328
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.773
	CNS0095610	Silvery flower (tetraploid) 1	2.783
	CNS0095611	Silvery flower (tetraploid) 2	5.812
	CNS0095612	Silvery flower (tetraploid) 3	2.185
	CNS0095613	Golden flower (tetraploid) 1	1.236
	CNS0095614	Golden flower (tetraploid) 2	2.181
	CNS0095615	Golden flower (tetraploid) 3	0.798
CRA001975	CRR073297	Stem 1	4.808
	CRR073298	Stem 2	5.092
	CRR073299	Stem 3	3.298
	CRR073300	Leaf 1	6.695
	CRR073301	Leaf 2	4.950
	CRR073302	Leaf 3	4.093
	CRR073303	Juvenile bud 1	5.050
	CRR073304	Juvenile bud 2	5.031
	CRR073305	Juvenile bud 3	4.459
	CRR073306	Third green 1	0.119
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.235
	CRR073309	Second white 1	0.085
	CRR073310	Second white 2	0.593
	CRR073311	Second white 3	0.541
	CRR073312	Silver flowering 1	0.098
	CRR073313	Silver flowering 2	0.244
	CRR073314	Silver flowering 3	0.260
	CRR073315	Gold flowering 1	0.441
	CRR073316	Gold flowering 2	0.545
	CRR073317	Gold flowering 3	0.270
	CRR073318	Tawny withering 1	0.175
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.326