Gene detail

Detail information of GWHGAAZE025589

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007013284.1	6.506E-148	Integral membrane protein-like isoform 1 [Theobroma cacao]
COG	YP_002463258.1	3E-25	hypothetical protein Cagg_1927
trEMBL	tr\|A0A061GUT8\|A0A061GUT8_THECC	2E-148	Integral membrane protein-like isoform 1 {ECO:0000313\|EMBL:EOY30904.1}
TAIR10	AT5G19930.2	2E-89	Protein of unknown function DUF92, transmembrane

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	63945459	63953092	+
GWHAAZE00000007	mRNA	63945459	63953092	+
GWHAAZE00000007	exon	63945459	63945604	+
GWHAAZE00000007	exon	63946599	63946711	+
GWHAAZE00000007	exon	63948538	63948640	+
GWHAAZE00000007	exon	63949805	63950027	+
GWHAAZE00000007	exon	63950610	63950858	+
GWHAAZE00000007	exon	63952961	63953092	+
GWHAAZE00000007	CDS	63945459	63945604	+
GWHAAZE00000007	CDS	63946599	63946711	+
GWHAAZE00000007	CDS	63948538	63948640	+
GWHAAZE00000007	CDS	63949805	63950027	+
GWHAAZE00000007	CDS	63950610	63950858	+
GWHAAZE00000007	CDS	63952961	63953092	+

Transcript Sequence
>GWHTAAZE025623 ATGGAAAAATCTATGATCCAACCTTCAGTTGCAGTCTTAATTTCATCAGCAATCGCCATTAGAGCTTACAGAAGAAAATCTCTCGACCTTTCTGGCGCACTCGTAGGCTTTGTCGTCCTGACCATTCACTTCTCCTTCAATTACAGGGTTGGAGCATTGTTACTAGTTTTCTTTTTCACTTCGTCGAAGCTTACAAAGGTCGGACATGAGAAGAAAAGACAACTGGAAGCTGAATTCAAAAGGGAGGCCAGCGGAATTGGGATCTATATGACCAGCAATGAATTAGATAGACTATTTTACAGACGGTTTATGGAGATGATTTTGGTGCCTCATGGAGAATGCTTAGGGGCCTTGTTGAGAAGGATACAAGTTCTATCTAATAGCGGAATTGCTACCATTTTAATTATGATTTTTTGGAAGCTAACTGGATCAGAGGACCGGTGCTTAGGTTCAAAAGAATCGAACCTAATAACATCTTTCATGGGTGGCATAATTGGACATTATTCTTGCTGTAATGGAGACACTTGGTCTTCAGAGCTTGGGATACTCAGTGATGCACAACCTCGACTAATAACGACCTTCAAGCCAGTTAAGAGGGGTACAAATGGTGGTGTGACAAAAGCAGGACTCCTGGCAGCTGCAGCAGCAGGCGGCATAATTGGACTGACATTTGTTCTACTAGGTTTTTTAACAACCAAATGCACGTACGATAAAGCCCTTAAACAAATGTTGGTTATACCTCTTGCTGCTCTGGCTGGACTATGTGGAAGTGTTATAGATTCTCTGTTGGGAGCCACGCTGCAGTTTAGTGGATTTTGCACTGTTCGTAATAAGGTAGTTGGGAAACCAGGACCGACCGTGAAAAAAATCTCTGGGATTAGTATTCTTGATAACAATGCTGTCAACTTCGTATCAGTATTGCTGACTACAATGCTTACTTCTGTTGCCTGCTTACACATATTTTGA

Network for GWHGAAZE025589

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0051
CFinderModule0298

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01940.17	DUF92	14	309	8.20E-70

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0016021	cellular_component	integral component of membrane

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	42.805
	SRR3591706	second leaf	23.124
	SRR3591707	mature leaf	16.912
	SRR3591708	Shoot apex	36.401
	SRR3591709	Stem	54.998
	SRR3591710	White floral bud	209.170
	SRR3591711	White flower	125.867
	SRR3591712	Green floral bud	214.467
	SRR3591713	Yellow flower	65.832
SRP173429	SRR8316895	Juvenile bud stage	43.228
	SRR8316896	Juvenile bud stage	68.536
	SRR8316897	Juvenile bud stage	34.382
	SRR8316894	Third green stage	40.539
	SRR8316900	Third green stage	208.042
	SRR8316901	Third green stage	181.216
	SRR8316898	Complete white stage	149.530
	SRR8316899	Complete white stage	317.377
	SRR8316903	Complete white stage	226.166
	SRR8316902	Silver flowering stage	51.757
	SRR8316904	Silver flowering stage	62.061
	SRR8316905	Silver flowering stage	23.246
	SRR8316906	Gold flowering stage	62.407
	SRR8316907	Gold flowering stage	61.331
	SRR8316908	Gold flowering stage	55.954
SRP132670	SRR6706286	Control	239.317
	SRR6706287	Light intensity 50%	241.309
	SRR6706288	Light intensity 20%	259.077
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	84.662
	CNS0095593	Slightly white alabastrum(diploid) 2	115.113
	CNS0095594	Slightly white alabastrum(diploid) 3	77.449
	CNS0095595	Whole white alabastrum(diploid) 2	137.852
	CNS0095596	Whole white alabastrum(diploid) 3	171.064
	CNS0095597	Whole white alabastrum(diploid) 4	126.088
	CNS0095598	Silvery flower (diploied) 1	51.940
	CNS0095599	Silvery flower (diploied) 2	75.292
	CNS0095600	Silvery flower (diploied) 3	130.474
	CNS0095601	Golden flower (diploid) 1	58.367
	CNS0095602	Golden flower (diploid) 2	58.358
	CNS0095603	Golden flower (diploid) 3	59.878
	CNS0095604	Slightly white alabastrum(tetraploid) 1	107.269
	CNS0095605	Slightly white alabastrum(tetraploid) 2	91.709
	CNS0095606	Slightly white alabastrum(tetraploid) 3	104.365
	CNS0095607	Whole white alabastrum(tetraploid) 1	76.654
	CNS0095608	Whole white alabastrum(tetraploid) 2	114.216
	CNS0095609	Whole white alabastrum(tetraploid) 3	167.692
	CNS0095610	Silvery flower (tetraploid) 1	75.851
	CNS0095611	Silvery flower (tetraploid) 2	74.041
	CNS0095612	Silvery flower (tetraploid) 3	86.695
	CNS0095613	Golden flower (tetraploid) 1	30.394
	CNS0095614	Golden flower (tetraploid) 2	66.597
	CNS0095615	Golden flower (tetraploid) 3	55.469
CRA001975	CRR073297	Stem 1	77.573
	CRR073298	Stem 2	69.749
	CRR073299	Stem 3	62.775
	CRR073300	Leaf 1	174.327
	CRR073301	Leaf 2	150.555
	CRR073302	Leaf 3	161.536
	CRR073303	Juvenile bud 1	213.109
	CRR073304	Juvenile bud 2	223.272
	CRR073305	Juvenile bud 3	209.716
	CRR073306	Third green 1	79.023
	CRR073307	Third green 2	55.516
	CRR073308	Third green 3	57.489
	CRR073309	Second white 1	38.932
	CRR073310	Second white 2	31.271
	CRR073311	Second white 3	16.808
	CRR073312	Silver flowering 1	13.100
	CRR073313	Silver flowering 2	15.125
	CRR073314	Silver flowering 3	10.756
	CRR073315	Gold flowering 1	13.155
	CRR073316	Gold flowering 2	13.630
	CRR073317	Gold flowering 3	11.535
	CRR073318	Tawny withering 1	27.005
	CRR073319	Tawny withering 2	24.847
	CRR073320	Tawny withering 3	21.071