Gene detail

Detail information of GWHGAAZE025593

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP20805.1	0	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q93Z92\|RING4_ARATH	3E-43	E3 ubiquitin-protein ligase At4g11680
trEMBL	tr\|A0A068VJ18\|A0A068VJ18_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_1779 {ECO:0000313\|EMBL:CDP20805.1}
TAIR10	AT4G32600.1	7E-103	RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	64061561	64068504	+
GWHAAZE00000007	mRNA	64061561	64068504	+
GWHAAZE00000007	exon	64061561	64062231	+
GWHAAZE00000007	exon	64063521	64063551	+
GWHAAZE00000007	exon	64064913	64065076	+
GWHAAZE00000007	exon	64065823	64066120	+
GWHAAZE00000007	exon	64068337	64068504	+
GWHAAZE00000007	CDS	64061561	64062231	+
GWHAAZE00000007	CDS	64063521	64063551	+
GWHAAZE00000007	CDS	64064913	64065076	+
GWHAAZE00000007	CDS	64065823	64066120	+
GWHAAZE00000007	CDS	64068337	64068504	+

Transcript Sequence
>GWHTAAZE025627 ATGGCTGTGTCCTCTCAAGAAGCAAGTTTAAAGAACCCAACTGACAGATTCCCTTTGCTCATGGAGGGGCCTGAAAACAATGAAAATAATGGGCACATTATTGACATAGAAAGAGGTGGTGATACGTCTTCATCAAACCCTAGCGATAATCTTTCTTCGCATAACTTCAGCCAGCCCAATAATGAAGATAGACCATCAAGTAGTCCTCGGGTTCCTATAATTCATTCTCCTTCATCTTCATCTGTTGGATCAAATCGGAGTTCCTCACTTGAGAGGAGAGGTGAAGGCCGTCGTCATTGGAGCCCTTTTAATACCGTGCTATGGATTTCCGTTGAACTGTTGTTCACTTTAGGCCAAATTATTGCGGCCATTGTTGTTCTTTCTGTGTCAAAAAATGAAAACCCACAGACCCCTTTGTTTGCTTGGATTGTGGGTTATGCAACCGGGTGTACAGCCAGCCTTCCCCTTCTTTATTGGCGCTATATTAACCGCAATCAGGGTACTGAGCAAGCGTCAAATCAAGTTCGCCAGGGTTCTTCGCAGGGGAACAATCAGCCGGAAAATAATTCTTACATAACAATCTCACTAACGCGTTCCTCGGAAGATGAAGATGGTCAGAACACTTCTGCGGGTACATGGAATGGTCAAACTATGGCTTGCCCAAATTCTAGGAAGAAAACCTTTGATCATCTAAAGAAAGGGCTTGATCTAATTAATTATGAAATACGTCTCTTTGGCAGGCTTATTATGCTAGTAGACAACTTCAAAATGGCATTGGATTGCTTCTTTGCCGTATGGTTTGTAGTTGGTAATGTATGGATCTTTGGCGGACATTCCTCTTCTTCTGATGCTCCTAATTTGTACAGATTATGTATAGTGTTTCTTACCTTTAGCTGTATCGGGTATGCTATGCCATTTATATTGTGCGCAATGATATGCTGCTGCTTGCCATGCATTATTTCAATCCTTGGTGTCCGTGAGAATATGAATCAAATGAGAGGAGCGAGTGAAGAGTCGATTAGCGCTTTGCCGACGCACAAATTCAAGTTAAAGAGAAATGGAAGCAGTACCAGTAGTAGAGACAGTAGTAATTCAGGAGCCGATGAAGGCGGGTTTGTAGCAGCAGGGACCGAAAAGGAGCGTACTATCTCTGGGGAAGATGCTTTGTGTTGCATTTGCTTGGCAAGATACATGGATAACGATGAGTTGAGGGAGCTCCCTTGCTCTCATTTCTTCCATACCGAATGCGTGGATAAGTGGCTCAAGATCAACGCTTCATGTCCCCTTTGTAAGTTTGAGATCGGTGGTACCAACGATAATTCATCATCATAG

Network for GWHGAAZE025593

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13639.7	zf-RING_2	390	431	1.20E-12

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	20.988
	SRR3591706	second leaf	10.049
	SRR3591707	mature leaf	15.924
	SRR3591708	Shoot apex	17.099
	SRR3591709	Stem	29.921
	SRR3591710	White floral bud	30.050
	SRR3591711	White flower	39.798
	SRR3591712	Green floral bud	21.614
	SRR3591713	Yellow flower	32.116
SRP173429	SRR8316895	Juvenile bud stage	12.610
	SRR8316896	Juvenile bud stage	16.684
	SRR8316897	Juvenile bud stage	9.929
	SRR8316894	Third green stage	5.326
	SRR8316900	Third green stage	15.821
	SRR8316901	Third green stage	19.907
	SRR8316898	Complete white stage	14.076
	SRR8316899	Complete white stage	34.290
	SRR8316903	Complete white stage	18.790
	SRR8316902	Silver flowering stage	17.840
	SRR8316904	Silver flowering stage	21.702
	SRR8316905	Silver flowering stage	9.489
	SRR8316906	Gold flowering stage	38.634
	SRR8316907	Gold flowering stage	35.187
	SRR8316908	Gold flowering stage	39.565
SRP132670	SRR6706286	Control	17.557
	SRR6706287	Light intensity 50%	17.499
	SRR6706288	Light intensity 20%	19.160
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	19.944
	CNS0095593	Slightly white alabastrum(diploid) 2	22.730
	CNS0095594	Slightly white alabastrum(diploid) 3	20.155
	CNS0095595	Whole white alabastrum(diploid) 2	17.857
	CNS0095596	Whole white alabastrum(diploid) 3	13.278
	CNS0095597	Whole white alabastrum(diploid) 4	14.030
	CNS0095598	Silvery flower (diploied) 1	21.195
	CNS0095599	Silvery flower (diploied) 2	17.729
	CNS0095600	Silvery flower (diploied) 3	32.789
	CNS0095601	Golden flower (diploid) 1	23.563
	CNS0095602	Golden flower (diploid) 2	33.137
	CNS0095603	Golden flower (diploid) 3	33.527
	CNS0095604	Slightly white alabastrum(tetraploid) 1	14.731
	CNS0095605	Slightly white alabastrum(tetraploid) 2	13.866
	CNS0095606	Slightly white alabastrum(tetraploid) 3	21.671
	CNS0095607	Whole white alabastrum(tetraploid) 1	15.184
	CNS0095608	Whole white alabastrum(tetraploid) 2	14.183
	CNS0095609	Whole white alabastrum(tetraploid) 3	15.877
	CNS0095610	Silvery flower (tetraploid) 1	36.034
	CNS0095611	Silvery flower (tetraploid) 2	33.234
	CNS0095612	Silvery flower (tetraploid) 3	33.316
	CNS0095613	Golden flower (tetraploid) 1	25.346
	CNS0095614	Golden flower (tetraploid) 2	34.070
	CNS0095615	Golden flower (tetraploid) 3	46.697
CRA001975	CRR073297	Stem 1	15.352
	CRR073298	Stem 2	14.463
	CRR073299	Stem 3	15.530
	CRR073300	Leaf 1	18.408
	CRR073301	Leaf 2	17.145
	CRR073302	Leaf 3	12.598
	CRR073303	Juvenile bud 1	18.396
	CRR073304	Juvenile bud 2	15.588
	CRR073305	Juvenile bud 3	21.979
	CRR073306	Third green 1	19.791
	CRR073307	Third green 2	22.196
	CRR073308	Third green 3	19.046
	CRR073309	Second white 1	22.898
	CRR073310	Second white 2	27.428
	CRR073311	Second white 3	27.169
	CRR073312	Silver flowering 1	28.379
	CRR073313	Silver flowering 2	24.620
	CRR073314	Silver flowering 3	28.837
	CRR073315	Gold flowering 1	12.989
	CRR073316	Gold flowering 2	14.183
	CRR073317	Gold flowering 3	11.408
	CRR073318	Tawny withering 1	21.601
	CRR073319	Tawny withering 2	28.103
	CRR073320	Tawny withering 3	25.229