Gene detail

Detail information of GWHGAAZE025599

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010249861.1	2.5699E-176	PREDICTED: syntaxin-32-like [Nelumbo nucifera]
Swissprot	tr\|Q9LK09\|SYP32_ARATH	6E-153	Syntaxin-32
trEMBL	tr\|A0A067K8A0\|A0A067K8A0_JATCU	5E-173	Uncharacterized protein {ECO:0000313\|EMBL:KDP32322.1}
TAIR10	AT3G24350.1	7E-95	syntaxin of plants 32

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	64154356	64161922	-
GWHAAZE00000007	mRNA	64154356	64161922	-
GWHAAZE00000007	exon	64161679	64161922	-
GWHAAZE00000007	exon	64157980	64158230	-
GWHAAZE00000007	exon	64157435	64157604	-
GWHAAZE00000007	exon	64156760	64156840	-
GWHAAZE00000007	exon	64155750	64155947	-
GWHAAZE00000007	exon	64154356	64154515	-
GWHAAZE00000007	CDS	64161679	64161922	-
GWHAAZE00000007	CDS	64157980	64158230	-
GWHAAZE00000007	CDS	64157435	64157604	-
GWHAAZE00000007	CDS	64156760	64156840	-
GWHAAZE00000007	CDS	64155750	64155947	-
GWHAAZE00000007	CDS	64154356	64154515	-

Transcript Sequence
>GWHTAAZE025633 ATGAAAACAGCGCAATCGTCGTATCGAGATCGAACGAATGAATTCCTCAATGTAGCTGAGAAGCTAAAGAAATCCTTCTCCAATTCGCAGATCGTTAGTAGTGGCGGTGGCGGTGCTGGTGGTTCCAAGGGGGAGGGATCATCACGATCCGCGGTGTCTATTCAGTCGGAGTTCAACAAAAGGGCTTCGAAAATAGGGTTTGGGATTCACCAGACCTCGCAAAAGCTTGCCAAGTTGGCAAAATTGGCAAAGAGGACATCAGTTTTCGATGATCCAACAATGGAGATCCAAGAATTGACAGCTGTCATCAAGCAGGATATTACTGCACTCAACTCAGCTGTAGTGGACTTGCAGCTTGTGTGCAATTCCCAAAACGAAAGTGGAAACATATCAAGTGATACCACCACCCATTCAACAACAGTTGTTGATAACCTGAAGAATCGCTTGATGAGCACCACGAAAGAGTTCAAAGAAGTCCTCACTATGCGGACGGAGAACCTGAAGGTTCATGAGAACAGAAGACAATTATTTTCTTCAACCAATTCGAAAGAGTCGGCTAATCCTTTTGTTCGCCAGCGTCCCTTAGCTGCCAAATCTGCTAGCACATCTACTTCTCCCCCTCCATGGGCCAATGGTTCCACATCTTCATCCCAGTTATTTCCAAGAGTAAACGTCCACATTGCTGTTCCTCTCAGTACTTTCTTGTACAAGCAAGCATTGCTTACCATTCGGTTGAAGTTTATTAGGAAGTCTGCAGACGGGGAATCTCAGCCATTGCTACAAAACCACCAGCAGCAACAAGAGTTAGTTCCTATACAACAAGACACTTACATGCAGAGCAGAGCTGAGGCTCTTCAGAACGTTGAGTCAACCATTCACGAATTGAGCAACATATTCACCCAATTGGCAACCATGGTTTCTCAACAAGGAGAGCTTGCGATTAGGATTGACGAGAACATGGAGGACACGTTGGCAAACGTAGAAGGGGCACAGGGGCAACTGGTGAGGTACCTCAACAGTATATCGTCCAACAGATGGCTGATGATCAAGATATTCTTTGTATTGATTGCTTTCCTCATGATTTTCCTCTTCTTTGTTGCTTAA

Network for GWHGAAZE025599

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0199

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00804.26	Syntaxin	253	310	1.20E-06
PF05739.20	SNARE	312	363	7.60E-16

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K08490	STX5	SNARE interactions in vesicular transport	map04130

Gene Ontology

GO term	Ontology	Name
GO:0006886	biological_process	intracellular protein transport
GO:0016192	biological_process	vesicle-mediated transport
GO:0016020	cellular_component	membrane
GO:0005484	molecular_function	SNAP receptor activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	37.086
	SRR3591706	second leaf	16.472
	SRR3591707	mature leaf	16.512
	SRR3591708	Shoot apex	20.463
	SRR3591709	Stem	30.124
	SRR3591710	White floral bud	31.036
	SRR3591711	White flower	33.662
	SRR3591712	Green floral bud	43.496
	SRR3591713	Yellow flower	27.166
SRP173429	SRR8316895	Juvenile bud stage	20.641
	SRR8316896	Juvenile bud stage	25.831
	SRR8316897	Juvenile bud stage	17.454
	SRR8316894	Third green stage	13.782
	SRR8316900	Third green stage	50.767
	SRR8316901	Third green stage	46.325
	SRR8316898	Complete white stage	18.997
	SRR8316899	Complete white stage	63.750
	SRR8316903	Complete white stage	28.855
	SRR8316902	Silver flowering stage	16.057
	SRR8316904	Silver flowering stage	20.469
	SRR8316905	Silver flowering stage	11.415
	SRR8316906	Gold flowering stage	41.720
	SRR8316907	Gold flowering stage	39.664
	SRR8316908	Gold flowering stage	43.120
SRP132670	SRR6706286	Control	64.479
	SRR6706287	Light intensity 50%	66.317
	SRR6706288	Light intensity 20%	75.407
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	24.022
	CNS0095593	Slightly white alabastrum(diploid) 2	24.613
	CNS0095594	Slightly white alabastrum(diploid) 3	21.126
	CNS0095595	Whole white alabastrum(diploid) 2	24.714
	CNS0095596	Whole white alabastrum(diploid) 3	30.326
	CNS0095597	Whole white alabastrum(diploid) 4	27.338
	CNS0095598	Silvery flower (diploied) 1	17.927
	CNS0095599	Silvery flower (diploied) 2	18.436
	CNS0095600	Silvery flower (diploied) 3	35.228
	CNS0095601	Golden flower (diploid) 1	14.242
	CNS0095602	Golden flower (diploid) 2	30.995
	CNS0095603	Golden flower (diploid) 3	27.495
	CNS0095604	Slightly white alabastrum(tetraploid) 1	35.367
	CNS0095605	Slightly white alabastrum(tetraploid) 2	27.258
	CNS0095606	Slightly white alabastrum(tetraploid) 3	47.398
	CNS0095607	Whole white alabastrum(tetraploid) 1	28.009
	CNS0095608	Whole white alabastrum(tetraploid) 2	29.157
	CNS0095609	Whole white alabastrum(tetraploid) 3	47.414
	CNS0095610	Silvery flower (tetraploid) 1	32.311
	CNS0095611	Silvery flower (tetraploid) 2	33.710
	CNS0095612	Silvery flower (tetraploid) 3	40.408
	CNS0095613	Golden flower (tetraploid) 1	24.856
	CNS0095614	Golden flower (tetraploid) 2	30.341
	CNS0095615	Golden flower (tetraploid) 3	31.518
CRA001975	CRR073297	Stem 1	35.136
	CRR073298	Stem 2	38.668
	CRR073299	Stem 3	43.539
	CRR073300	Leaf 1	56.446
	CRR073301	Leaf 2	56.574
	CRR073302	Leaf 3	64.159
	CRR073303	Juvenile bud 1	68.635
	CRR073304	Juvenile bud 2	57.953
	CRR073305	Juvenile bud 3	71.267
	CRR073306	Third green 1	42.130
	CRR073307	Third green 2	42.060
	CRR073308	Third green 3	37.800
	CRR073309	Second white 1	42.522
	CRR073310	Second white 2	38.501
	CRR073311	Second white 3	25.394
	CRR073312	Silver flowering 1	31.654
	CRR073313	Silver flowering 2	35.028
	CRR073314	Silver flowering 3	27.211
	CRR073315	Gold flowering 1	21.739
	CRR073316	Gold flowering 2	26.465
	CRR073317	Gold flowering 3	21.393
	CRR073318	Tawny withering 1	39.160
	CRR073319	Tawny withering 2	27.774
	CRR073320	Tawny withering 3	34.831