Detail information of GWHGAAZE025624


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCBI28088.30unnamed protein product [Vitis vinifera]
COGYP_003146622.18E-71DNA mismatch repair protein MutS
Swissprottr|Q9SMV7|MSH7_ARATH0DNA mismatch repair protein MSH7
trEMBLtr|F6HH29|F6HH29_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB51525.1}
TAIR10AT3G24495.10MUTS homolog 7

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene6477839864790927-
GWHAAZE00000007mRNA6477839864790927-
GWHAAZE00000007exon6477839864778877-
GWHAAZE00000007exon6477942964779556-
GWHAAZE00000007exon6478069564780791-
GWHAAZE00000007exon6478150664781919-
GWHAAZE00000007exon6478247564782669-
GWHAAZE00000007exon6478364364783920-
GWHAAZE00000007exon6478497164785088-
GWHAAZE00000007exon6478532964785516-
GWHAAZE00000007exon6478619164786238-
GWHAAZE00000007exon6478635664786389-
GWHAAZE00000007exon6478651964786650-
GWHAAZE00000007exon6478729764787392-
GWHAAZE00000007exon6478783964787905-
GWHAAZE00000007exon6478804564788100-
GWHAAZE00000007exon6478840564788500-
GWHAAZE00000007exon6478912364789675-
GWHAAZE00000007exon6479060264790927-
GWHAAZE00000007CDS6479060264790927-
GWHAAZE00000007CDS6478912364789675-
GWHAAZE00000007CDS6478840564788500-
GWHAAZE00000007CDS6478804564788100-
GWHAAZE00000007CDS6478783964787905-
GWHAAZE00000007CDS6478729764787392-
GWHAAZE00000007CDS6478651964786650-
GWHAAZE00000007CDS6478635664786389-
GWHAAZE00000007CDS6478619164786238-
GWHAAZE00000007CDS6478532964785516-
GWHAAZE00000007CDS6478497164785088-
GWHAAZE00000007CDS6478364364783920-
GWHAAZE00000007CDS6478247564782669-
GWHAAZE00000007CDS6478150664781919-
GWHAAZE00000007CDS6478069564780791-
GWHAAZE00000007CDS6477942964779556-
GWHAAZE00000007CDS6477839864778877-
Transcript Sequence

Network for GWHGAAZE025624

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01624.21MutS_I2733849.40E-31
PF05188.18MutS_II3935371.20E-14
PF05192.19MutS_III5577721.40E-32
PF00488.22MutS_V84310343.10E-70
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K08737MSH6 Mismatch repair map03430

Gene Ontology

GO term OntologyName
GO:0006298biological_processmismatch repair
GO:0005524molecular_functionATP binding
GO:0030983molecular_functionmismatched DNA binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf4.518
SRR3591706second leaf4.724
SRR3591707mature leaf1.925
SRR3591708Shoot apex6.963
SRR3591709Stem5.129
SRR3591710White floral bud1.376
SRR3591711White flower1.048
SRR3591712Green floral bud1.625
SRR3591713Yellow flower0.886
SRP173429 SRR8316895Juvenile bud stage 3.180
SRR8316896Juvenile bud stage 2.805
SRR8316897Juvenile bud stage 0.980
SRR8316894Third green stage 0.877
SRR8316900Third green stage 1.146
SRR8316901Third green stage 0.747
SRR8316898Complete white stage 0.159
SRR8316899Complete white stage 1.147
SRR8316903Complete white stage 0.432
SRR8316902Silver flowering stage0.257
SRR8316904Silver flowering stage0.430
SRR8316905Silver flowering stage0.089
SRR8316906Gold flowering stage 0.392
SRR8316907Gold flowering stage 0.392
SRR8316908Gold flowering stage 0.196
SRP132670SRR6706286Control0.964
SRR6706287Light intensity 50%1.215
SRR6706288Light intensity 20%1.153
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.077
CNS0095593Slightly white alabastrum(diploid) 20.518
CNS0095594Slightly white alabastrum(diploid) 30.895
CNS0095595Whole white alabastrum(diploid) 20.720
CNS0095596Whole white alabastrum(diploid) 30.610
CNS0095597Whole white alabastrum(diploid) 40.683
CNS0095598Silvery flower (diploied) 10.683
CNS0095599Silvery flower (diploied) 20.602
CNS0095600Silvery flower (diploied) 30.988
CNS0095601Golden flower (diploid) 10.516
CNS0095602Golden flower (diploid) 20.710
CNS0095603Golden flower (diploid) 30.745
CNS0095604Slightly white alabastrum(tetraploid) 10.927
CNS0095605Slightly white alabastrum(tetraploid) 20.700
CNS0095606Slightly white alabastrum(tetraploid) 31.557
CNS0095607Whole white alabastrum(tetraploid) 10.493
CNS0095608Whole white alabastrum(tetraploid) 20.368
CNS0095609Whole white alabastrum(tetraploid) 30.811
CNS0095610Silvery flower (tetraploid) 10.287
CNS0095611Silvery flower (tetraploid) 20.266
CNS0095612Silvery flower (tetraploid) 30.124
CNS0095613Golden flower (tetraploid) 10.038
CNS0095614Golden flower (tetraploid) 20.155
CNS0095615Golden flower (tetraploid) 30.075
CRA001975CRR073297Stem 13.548
CRR073298Stem 22.135
CRR073299Stem 32.739
CRR073300Leaf 11.146
CRR073301Leaf 21.091
CRR073302Leaf 30.435
CRR073303Juvenile bud 10.949
CRR073304Juvenile bud 20.298
CRR073305Juvenile bud 30.531
CRR073306Third green 10.111
CRR073307Third green 20.023
CRR073308Third green 30.233
CRR073309Second white 10.021
CRR073310Second white 20.111
CRR073311Second white 30.022
CRR073312Silver flowering 10.014
CRR073313Silver flowering 20.048
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.791
CRR073316Gold flowering 21.203
CRR073317Gold flowering 30.704
CRR073318Tawny withering 10.887
CRR073319Tawny withering 20.817
CRR073320Tawny withering 31.533