Detail information of GWHGAAZE025626


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP03348.10unnamed protein product [Coffea canephora]
COGYP_003890169.14E-173aldehyde dehydrogenase
Swissprottr|Q56YU0|AL2C4_ARATH0Aldehyde dehydrogenase family 2 member C4
trEMBLtr|A0A068U6V3|A0A068U6V3_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_9 {ECO:0000313|EMBL:CDP03348.1}
TAIR10AT3G24503.10aldehyde dehydrogenase 2C4

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene6479935764804489-
GWHAAZE00000007mRNA6479935764804489-
GWHAAZE00000007exon6479935764799630-
GWHAAZE00000007exon6480015864800219-
GWHAAZE00000007exon6480032764800464-
GWHAAZE00000007exon6480114164801259-
GWHAAZE00000007exon6480135864801538-
GWHAAZE00000007exon6480203964802128-
GWHAAZE00000007exon6480222864802611-
GWHAAZE00000007exon6480403464804247-
GWHAAZE00000007exon6480446464804489-
GWHAAZE00000007CDS6480446464804489-
GWHAAZE00000007CDS6480403464804247-
GWHAAZE00000007CDS6480222864802611-
GWHAAZE00000007CDS6480203964802128-
GWHAAZE00000007CDS6480135864801538-
GWHAAZE00000007CDS6480114164801259-
GWHAAZE00000007CDS6480032764800464-
GWHAAZE00000007CDS6480015864800219-
GWHAAZE00000007CDS6479935764799630-
Transcript Sequence

Network for GWHGAAZE025626

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00171.23Aldedh344856.60E-169
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12355REF1 Phenylpropanoid biosynthesis map00940

Gene Ontology

GO term OntologyName
GO:0055114biological_processoxidation-reduction process
GO:0016491molecular_functionoxidoreductase activity
GO:0016620molecular_functionoxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf12.083
SRR3591706second leaf1.902
SRR3591707mature leaf1.656
SRR3591708Shoot apex4.328
SRR3591709Stem8.448
SRR3591710White floral bud97.153
SRR3591711White flower142.745
SRR3591712Green floral bud16.802
SRR3591713Yellow flower40.943
SRP173429 SRR8316895Juvenile bud stage 7.095
SRR8316896Juvenile bud stage 15.596
SRR8316897Juvenile bud stage 8.728
SRR8316894Third green stage 7.414
SRR8316900Third green stage 22.844
SRR8316901Third green stage 31.343
SRR8316898Complete white stage 31.390
SRR8316899Complete white stage 15.892
SRR8316903Complete white stage 35.002
SRR8316902Silver flowering stage143.350
SRR8316904Silver flowering stage158.254
SRR8316905Silver flowering stage95.177
SRR8316906Gold flowering stage 321.521
SRR8316907Gold flowering stage 368.750
SRR8316908Gold flowering stage 219.236
SRP132670SRR6706286Control28.851
SRR6706287Light intensity 50%31.305
SRR6706288Light intensity 20%30.223
CNP0000432CNS0095592Slightly white alabastrum(diploid) 110.226
CNS0095593Slightly white alabastrum(diploid) 28.032
CNS0095594Slightly white alabastrum(diploid) 312.693
CNS0095595Whole white alabastrum(diploid) 25.352
CNS0095596Whole white alabastrum(diploid) 37.225
CNS0095597Whole white alabastrum(diploid) 48.425
CNS0095598Silvery flower (diploied) 19.560
CNS0095599Silvery flower (diploied) 28.253
CNS0095600Silvery flower (diploied) 367.047
CNS0095601Golden flower (diploid) 17.793
CNS0095602Golden flower (diploid) 215.794
CNS0095603Golden flower (diploid) 315.240
CNS0095604Slightly white alabastrum(tetraploid) 111.046
CNS0095605Slightly white alabastrum(tetraploid) 212.483
CNS0095606Slightly white alabastrum(tetraploid) 311.171
CNS0095607Whole white alabastrum(tetraploid) 113.324
CNS0095608Whole white alabastrum(tetraploid) 213.433
CNS0095609Whole white alabastrum(tetraploid) 341.734
CNS0095610Silvery flower (tetraploid) 184.920
CNS0095611Silvery flower (tetraploid) 235.312
CNS0095612Silvery flower (tetraploid) 33.679
CNS0095613Golden flower (tetraploid) 148.923
CNS0095614Golden flower (tetraploid) 295.407
CNS0095615Golden flower (tetraploid) 328.220
CRA001975CRR073297Stem 111.126
CRR073298Stem 210.486
CRR073299Stem 36.431
CRR073300Leaf 110.716
CRR073301Leaf 212.505
CRR073302Leaf 311.500
CRR073303Juvenile bud 12.537
CRR073304Juvenile bud 22.838
CRR073305Juvenile bud 36.096
CRR073306Third green 1140.854
CRR073307Third green 250.195
CRR073308Third green 398.373
CRR073309Second white 120.491
CRR073310Second white 232.847
CRR073311Second white 341.312
CRR073312Silver flowering 114.357
CRR073313Silver flowering 29.377
CRR073314Silver flowering 38.382
CRR073315Gold flowering 10.306
CRR073316Gold flowering 21.042
CRR073317Gold flowering 30.458
CRR073318Tawny withering 14.505
CRR073319Tawny withering 22.362
CRR073320Tawny withering 33.962