Gene detail

Detail information of GWHGAAZE025628

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AIL29215.1	0	aldehyde dehydrogenase [Camellia oleifera]
COG	YP_722268.1	4E-159	aldehyde dehydrogenase
Swissprot	tr\|Q56YU0\|AL2C4_ARATH	0	Aldehyde dehydrogenase family 2 member C4
trEMBL	tr\|A0A077D7R3\|A0A077D7R3_9ERIC	0	Aldehyde dehydrogenase {ECO:0000313\|EMBL:AIL29215.1}
TAIR10	AT3G24503.1	4E-169	aldehyde dehydrogenase 2C4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	64837956	64841833	-
GWHAAZE00000007	mRNA	64837956	64841833	-
GWHAAZE00000007	exon	64841465	64841833	-
GWHAAZE00000007	exon	64840524	64840613	-
GWHAAZE00000007	exon	64839511	64839684	-
GWHAAZE00000007	exon	64839096	64839233	-
GWHAAZE00000007	exon	64838820	64838957	-
GWHAAZE00000007	exon	64838483	64838544	-
GWHAAZE00000007	exon	64837956	64838233	-
GWHAAZE00000007	CDS	64841465	64841833	-
GWHAAZE00000007	CDS	64840524	64840613	-
GWHAAZE00000007	CDS	64839511	64839684	-
GWHAAZE00000007	CDS	64839096	64839233	-
GWHAAZE00000007	CDS	64838820	64838957	-
GWHAAZE00000007	CDS	64838483	64838544	-
GWHAAZE00000007	CDS	64837960	64838233	-
GWHAAZE00000007	three_prime_UTR	64837956	64837959	-

Transcript Sequence
>GWHTAAZE025662 ATGATGAAATTTGCGGATTTAATCGAAGAAAATATAGAAGAAATAGCTGCATTGGATACAATTGATGCAGGCAAATTGTTCAATGTTGGCACGTCCATTGACGTACCAATGGCAGCGAATTGTTTGCGTTACTACGCAGGTGCAGCCGATAAAATTCACGGGGAGACGCTAAAAATGTCGAGAGAGCTTCAAGGTTACACTTTGCGCGAGCCAATTGGCGTTATTGGACACATTATCCCCTGGAACTACCCTTGTAACATGTTCTTCATGAAGGTTAGCCCGGCCTTGGCTGCCGGGTGCACCATGGTGGTCAAGCCGGCCGAGCAGTCTCCCCTTTCGGCTCTTTTTTTAGCTAATTTGGCTAAGCTGGCTGGTATCCCTGATGGAGTGCTTAATGTTATAACTGGATTTGGACCAACAGCTGGTGCTGCAATTAGCTCTCATATGGACATTGATAAAGTGAGTTTTACGGGGTCCACAGAGGTGGGGCGTTCAATAATGCAGGCTGCAGCAGCAAGCAACTTGAAAACAGTGTCTTTGGAATTGGGAGGGAAATCCCCTCTCATTATTTTTGATGATGCTGATGTTGATAAGGCTGCTGACCTCGCTCTTTTGGGCATTTTATGTAACAAGGGAGAAATTTGTGTTGCGAGTTCTCGGGTTTTGGTCCAAGAAGGAATTTATGATAAACTTGCAAACAAGTTGGTCGAGAAGGCAAAAACATGGCTGGTTGGCGATCCTTTTGATCCTTCTACTTGTCAAGGACCCCAAGTCGATAAGACGCAGTACAATAAAATACTTTCGTACATTGAGCATGGCAAGAGTGAAGGCGCATCTTTGTTAACGGGTGGTAAGCCTAGTGGGAAAAAGGGATATTATATCGAGCCAACAATTTTCGCCAATGTTATGGACAATATGATTATTGCAAAGGATGAGATATTTGGGCCTGTTATGTCACTCATGAAGTTCAAAACTGTCGAGGAGGCGATTAAGAGAGCCAATGCAACGAGATACGGGTTAGCAGCTGGGATTGTGACCAATGACATAAATGTTGCGAATACTGTTTCGAGATCAATCCGAGCCGGTATCATTTGGATAAATTGTTACCTAGCATTTGACCTAGATTGTCCCGTGGGAGGGTACAAAATGAGTGGGTTTAAGAGTGATATGGGAATGGAAGGCCTTGATAAGTATCTTCAAGTTAAAGCTGTTGTTACGCCCATTTACAATTCTCCTTGGCTATGAATTT

Network for GWHGAAZE025628

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00171.23	Aldedh	1	404	8.90E-157

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12355	REF1	Phenylpropanoid biosynthesis	map00940

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016491	molecular_function	oxidoreductase activity
GO:0016620	molecular_function	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	13.295
	SRR3591706	second leaf	36.314
	SRR3591707	mature leaf	12.686
	SRR3591708	Shoot apex	33.774
	SRR3591709	Stem	64.039
	SRR3591710	White floral bud	4.737
	SRR3591711	White flower	7.229
	SRR3591712	Green floral bud	10.589
	SRR3591713	Yellow flower	5.235
SRP173429	SRR8316895	Juvenile bud stage	14.498
	SRR8316896	Juvenile bud stage	17.341
	SRR8316897	Juvenile bud stage	7.306
	SRR8316894	Third green stage	4.810
	SRR8316900	Third green stage	22.955
	SRR8316901	Third green stage	23.299
	SRR8316898	Complete white stage	1.761
	SRR8316899	Complete white stage	7.455
	SRR8316903	Complete white stage	4.042
	SRR8316902	Silver flowering stage	2.163
	SRR8316904	Silver flowering stage	2.555
	SRR8316905	Silver flowering stage	1.544
	SRR8316906	Gold flowering stage	7.787
	SRR8316907	Gold flowering stage	4.327
	SRR8316908	Gold flowering stage	8.854
SRP132670	SRR6706286	Control	15.567
	SRR6706287	Light intensity 50%	16.175
	SRR6706288	Light intensity 20%	17.394
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.328
	CNS0095593	Slightly white alabastrum(diploid) 2	12.966
	CNS0095594	Slightly white alabastrum(diploid) 3	15.611
	CNS0095595	Whole white alabastrum(diploid) 2	11.630
	CNS0095596	Whole white alabastrum(diploid) 3	11.655
	CNS0095597	Whole white alabastrum(diploid) 4	6.916
	CNS0095598	Silvery flower (diploied) 1	5.513
	CNS0095599	Silvery flower (diploied) 2	5.007
	CNS0095600	Silvery flower (diploied) 3	2.785
	CNS0095601	Golden flower (diploid) 1	8.459
	CNS0095602	Golden flower (diploid) 2	4.626
	CNS0095603	Golden flower (diploid) 3	4.507
	CNS0095604	Slightly white alabastrum(tetraploid) 1	18.806
	CNS0095605	Slightly white alabastrum(tetraploid) 2	16.689
	CNS0095606	Slightly white alabastrum(tetraploid) 3	27.447
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.087
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.189
	CNS0095609	Whole white alabastrum(tetraploid) 3	18.534
	CNS0095610	Silvery flower (tetraploid) 1	3.281
	CNS0095611	Silvery flower (tetraploid) 2	8.112
	CNS0095612	Silvery flower (tetraploid) 3	12.276
	CNS0095613	Golden flower (tetraploid) 1	4.681
	CNS0095614	Golden flower (tetraploid) 2	5.467
	CNS0095615	Golden flower (tetraploid) 3	1.985
CRA001975	CRR073297	Stem 1	29.894
	CRR073298	Stem 2	23.036
	CRR073299	Stem 3	29.966
	CRR073300	Leaf 1	22.119
	CRR073301	Leaf 2	16.930
	CRR073302	Leaf 3	21.848
	CRR073303	Juvenile bud 1	6.459
	CRR073304	Juvenile bud 2	9.512
	CRR073305	Juvenile bud 3	6.430
	CRR073306	Third green 1	10.388
	CRR073307	Third green 2	5.482
	CRR073308	Third green 3	9.097
	CRR073309	Second white 1	8.937
	CRR073310	Second white 2	27.271
	CRR073311	Second white 3	15.345
	CRR073312	Silver flowering 1	15.092
	CRR073313	Silver flowering 2	12.491
	CRR073314	Silver flowering 3	10.917
	CRR073315	Gold flowering 1	32.946
	CRR073316	Gold flowering 2	47.772
	CRR073317	Gold flowering 3	25.929
	CRR073318	Tawny withering 1	118.152
	CRR073319	Tawny withering 2	126.780
	CRR073320	Tawny withering 3	49.595