Gene detail

Detail information of GWHGAAZE025638

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006451163.1	0	hypothetical protein CICLE_v10008039mg [Citrus clementina]
COG	YP_001998695.1	1E-45	short-chain dehydrogenase/reductase SDR
Swissprot	tr\|Q93ZA0\|NYC1_ARATH	0	Probable chlorophyll(ide) b reductase NYC1, chloroplastic (Precursor)
trEMBL	tr\|V4TV31\|V4TV31_9ROSI	0	Uncharacterized protein {ECO:0000313\|EMBL:ESR64403.1}
TAIR10	AT4G13250.1	0	NAD(P)-binding Rossmann-fold superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	65167697	65174268	+
GWHAAZE00000007	mRNA	65167697	65174268	+
GWHAAZE00000007	exon	65167697	65168120	+
GWHAAZE00000007	exon	65168605	65168683	+
GWHAAZE00000007	exon	65168795	65168930	+
GWHAAZE00000007	exon	65169312	65169386	+
GWHAAZE00000007	exon	65169731	65169926	+
GWHAAZE00000007	exon	65170578	65170646	+
GWHAAZE00000007	exon	65171361	65171500	+
GWHAAZE00000007	exon	65171661	65171783	+
GWHAAZE00000007	exon	65172375	65172567	+
GWHAAZE00000007	exon	65174080	65174268	+
GWHAAZE00000007	five_prime_UTR	65167697	65167799	+
GWHAAZE00000007	CDS	65167800	65168120	+
GWHAAZE00000007	CDS	65168605	65168683	+
GWHAAZE00000007	CDS	65168795	65168930	+
GWHAAZE00000007	CDS	65169312	65169386	+
GWHAAZE00000007	CDS	65169731	65169926	+
GWHAAZE00000007	CDS	65170578	65170646	+
GWHAAZE00000007	CDS	65171361	65171500	+
GWHAAZE00000007	CDS	65171661	65171783	+
GWHAAZE00000007	CDS	65172375	65172567	+
GWHAAZE00000007	CDS	65174080	65174268	+

Transcript Sequence
>GWHTAAZE025672 CACAATCCCCACCAAAATAAATAAATTTAGTAACCTCATTCTTCTCACTTTACCTTCAACTCTCTGACATTTCTCTCAACCATTTCACAAAAAAAAATAAAAAATGGCCACAGTGGCCAAAATTCTTGTCAACTACCACCACCACCGGACGGGCCAATCTCCGGCTATACGGCCGGTGAGTTTGGCCATGTGGGTCCCTGTTCCTGGTCGTCGTGGGTCTTGGGTAAAGCCGTGCCGGTCGTTTAAGTCCGAGGAGAGTACTTGTGAGAAAGATAGGGAAAATGGGAATCTGAAGGATAATAATAATGGGTTAGAGTCTAAAAGGGGGATTTATAGAACTATCGATGTCCTTAAATCTGCCTTTTTAAGGAATTCAAGTTCGGAGGAAAAGTTTTCCGAGAAGTTGGAGGAGAGTTTGTCTTCGATTGCTCTTCAAATTGGGAGATATATAGTGACCATGATGAGTACTGGAGTAGTATTATTCACAGGTTTTCAATTGTCAGGTGGAGATAGTCAAATGAATGCTTTGATATGGTATAGTTGGCTTGGAGGCATTATTATTGGAACTATGATTGGTTCCAACATGGTTTTAGAGGAAGTTAGTCGGGCCGGTCCTCGCAATGTTGTTATAACTGGCAGTACAAGAGGACTGGGAAAAGCTCTTGCTCGTGAATTTCTACTTTCTGGAGATCGAGTTGTTGTTGCTTCTCGCAGCCAAGAATCTGTTGATATGACCATTAGAGAGCTTGAGGAGAGCCTGAGTGAATGTATGGCAAGTGCTGGTAATGCGGCTAGGAAAAACTTGGTACATGCGAAAGTGGTGGGCATTGCTTGTGATGTTTGTCAACCCGATGATGTGTTGAAATTGGCAAATTTCGCTGTCAATGAATTCGGTTCTATAAATATTTGGATAAATAATGCTGGGACAAACAAAGGTTTTAGACCCTTGCTTCAGTTCAGCAACGAAGATATTCAACAGATTGTGTCAACAAACTTGGTTGGATCTATTCTTTGCACTCGTGAAGCCATGCGTGTGATGAGAGGCCAGAATACGGGCGGTCACATCTTTAATATGGACGGTGCTGGCTCTGGTGGATCTAGCACTCCTTTGACAGCTGTTTATGGGTCCACAAAGTGTGGCCTTAGGCAACTTCAGTCATCACTCTTGAAGGAGTGCAAAAGGTCGAATGTTGGAGTGCATACTGCCTCTCCAGGAATGGTCCTTACAGACTTGCTCTTGAGTGGGTCGAGTATTCAGAACAAGCAAATGTTTAACATAATATGCGAGCACCCCGAGACAGTTGCAAGAACTTTAGTTCCAAGGATGAGGGTTGTAAAGGGTAGCGGGAAAGCAATTAACTACTTGACCCCTCCTAGGATTTTACTTGCGTTGGTCACCGCGTGGCTAAGACGAGGTCGTTGGTTCGATGACAAGGGCCGGGCATTATATGCAGCGGAGGCCGACAGACTACGCAACTGGGCTGAAAGCCGTACGCGCTTTTCATTTACAGACGCAATGGAGATGTACACGGAGAACACTTGGGTCTCGGTCTTCTCCCTTTCGGTCGTTTGCGCTTTCATCATCCTCTCAAGTACAACAAGCAGCACATTACCAGGCACCTAA

Network for GWHGAAZE025638

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00106.26	adh_short	173	377	5.60E-34

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13606	NOL, NYC1	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Porphyrin and chlorophyll metabolism	map00860

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	32.748
	SRR3591706	second leaf	93.328
	SRR3591707	mature leaf	133.030
	SRR3591708	Shoot apex	44.239
	SRR3591709	Stem	57.317
	SRR3591710	White floral bud	435.970
	SRR3591711	White flower	285.496
	SRR3591712	Green floral bud	96.352
	SRR3591713	Yellow flower	251.904
SRP173429	SRR8316895	Juvenile bud stage	37.464
	SRR8316896	Juvenile bud stage	44.049
	SRR8316897	Juvenile bud stage	26.915
	SRR8316894	Third green stage	24.011
	SRR8316900	Third green stage	84.821
	SRR8316901	Third green stage	72.663
	SRR8316898	Complete white stage	307.614
	SRR8316899	Complete white stage	145.307
	SRR8316903	Complete white stage	435.721
	SRR8316902	Silver flowering stage	278.581
	SRR8316904	Silver flowering stage	464.261
	SRR8316905	Silver flowering stage	268.844
	SRR8316906	Gold flowering stage	578.641
	SRR8316907	Gold flowering stage	562.492
	SRR8316908	Gold flowering stage	586.986
SRP132670	SRR6706286	Control	104.540
	SRR6706287	Light intensity 50%	126.918
	SRR6706288	Light intensity 20%	105.394
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	30.810
	CNS0095593	Slightly white alabastrum(diploid) 2	26.567
	CNS0095594	Slightly white alabastrum(diploid) 3	24.464
	CNS0095595	Whole white alabastrum(diploid) 2	31.305
	CNS0095596	Whole white alabastrum(diploid) 3	34.806
	CNS0095597	Whole white alabastrum(diploid) 4	39.439
	CNS0095598	Silvery flower (diploied) 1	120.300
	CNS0095599	Silvery flower (diploied) 2	122.600
	CNS0095600	Silvery flower (diploied) 3	568.934
	CNS0095601	Golden flower (diploid) 1	127.283
	CNS0095602	Golden flower (diploid) 2	415.129
	CNS0095603	Golden flower (diploid) 3	388.969
	CNS0095604	Slightly white alabastrum(tetraploid) 1	42.999
	CNS0095605	Slightly white alabastrum(tetraploid) 2	34.177
	CNS0095606	Slightly white alabastrum(tetraploid) 3	75.124
	CNS0095607	Whole white alabastrum(tetraploid) 1	28.028
	CNS0095608	Whole white alabastrum(tetraploid) 2	27.730
	CNS0095609	Whole white alabastrum(tetraploid) 3	82.742
	CNS0095610	Silvery flower (tetraploid) 1	349.355
	CNS0095611	Silvery flower (tetraploid) 2	443.233
	CNS0095612	Silvery flower (tetraploid) 3	592.512
	CNS0095613	Golden flower (tetraploid) 1	245.480
	CNS0095614	Golden flower (tetraploid) 2	340.921
	CNS0095615	Golden flower (tetraploid) 3	748.745
CRA001975	CRR073297	Stem 1	52.532
	CRR073298	Stem 2	43.314
	CRR073299	Stem 3	69.525
	CRR073300	Leaf 1	39.283
	CRR073301	Leaf 2	35.467
	CRR073302	Leaf 3	44.563
	CRR073303	Juvenile bud 1	40.108
	CRR073304	Juvenile bud 2	168.494
	CRR073305	Juvenile bud 3	41.898
	CRR073306	Third green 1	439.143
	CRR073307	Third green 2	290.124
	CRR073308	Third green 3	308.066
	CRR073309	Second white 1	366.575
	CRR073310	Second white 2	341.872
	CRR073311	Second white 3	325.500
	CRR073312	Silver flowering 1	348.149
	CRR073313	Silver flowering 2	356.805
	CRR073314	Silver flowering 3	311.006
	CRR073315	Gold flowering 1	199.144
	CRR073316	Gold flowering 2	264.835
	CRR073317	Gold flowering 3	210.732
	CRR073318	Tawny withering 1	34.779
	CRR073319	Tawny withering 2	34.630
	CRR073320	Tawny withering 3	31.773