Gene detail

Detail information of GWHGAAZE025668

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002514268.1	3.01116E-88	transcription factor, putative [Ricinus communis]
Swissprot	tr\|Q8S3D1\|BH068_ARATH	2E-54	Transcription factor bHLH68
trEMBL	tr\|B9RKM4\|B9RKM4_RICCO	1E-88	Transcription factor, putative {ECO:0000313\|EMBL:EEF48222.1}
TAIR10	AT4G29100.1	5E-36	basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	65651690	65655425	-
GWHAAZE00000007	mRNA	65651690	65655425	-
GWHAAZE00000007	exon	65651690	65651755	-
GWHAAZE00000007	exon	65652074	65652139	-
GWHAAZE00000007	exon	65652849	65652914	-
GWHAAZE00000007	exon	65653203	65653277	-
GWHAAZE00000007	exon	65654253	65654547	-
GWHAAZE00000007	exon	65655178	65655425	-
GWHAAZE00000007	CDS	65655178	65655425	-
GWHAAZE00000007	CDS	65654253	65654547	-
GWHAAZE00000007	CDS	65653203	65653277	-
GWHAAZE00000007	CDS	65652849	65652914	-
GWHAAZE00000007	CDS	65652074	65652139	-
GWHAAZE00000007	CDS	65651690	65651755	-

Transcript Sequence
>GWHTAAZE025702 ATGAATAGGGGTCATGTATTGCAAAGCACACCAGTGCAACAGATGATGGGAGGCGGAAACCCTAATTGGTGGAGCATCAATACTAACATGAGGCCTCCTCCACCAAATCCTTCTCTCTTGCCGCCTCCTCCTCCTCCTTCCACTCTTTTCCCTAATCACTACGCTCCGCTGCCAGATTCTTCTTCATGGCAAGATAACAATGAGAATCATCAACAACTTCCAGCTGATTCATGGAGCCAACTCCTATTGGGTGGATTGGTGGGTGATCAAGAAGAACAAATGTTACAATTACATCATGCTTCATCCAATAATGGCACTACTACTACCACTAGTGAATTAGTAAAGCAAGAGAACTCCTCTTCATCAGGAGGCACAAGTAGCTTTGCGTATGGTACAACTAGCAATTGGTCACAAATGATGGCAGCAGCAGCCTCTTCTCCAAAGTCTTCTTGCATTTCTTCTACAATAAGCACTAACATTTTGGATTTTTCTACCAACAAATCTGATGCCTCTAGGCATCCACCTCCAGATCATTCCTCTGAGTGCAACAGCACTGCCAATGGTGGGACACCTAAAAAGCCTAGAGTTCAAGCTTCTTCAACCCAATCTACCTTCAAGGTGAGGAAGGAAAAATTAGGGGACAGAATAACGGCTCTTCACCAGCTAGTTTCCCCATTTGGAAAGACTGACACTGCTTCGGTATTGTTAGAAGCAATCGGATACATTAGATTCCTTCAGAGTCAAATTGAGGCCCTTAGTTTGCCGTACTTGGGCAGTGGATCAGCAAACATGAGGCATCAACACTCTGCTGTATGA

Network for GWHGAAZE025668

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0074

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046983	molecular_function	protein dimerization activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	80.844
	SRR3591706	second leaf	47.670
	SRR3591707	mature leaf	28.324
	SRR3591708	Shoot apex	60.035
	SRR3591709	Stem	92.386
	SRR3591710	White floral bud	92.385
	SRR3591711	White flower	75.097
	SRR3591712	Green floral bud	88.678
	SRR3591713	Yellow flower	19.134
SRP173429	SRR8316895	Juvenile bud stage	23.059
	SRR8316896	Juvenile bud stage	28.026
	SRR8316897	Juvenile bud stage	13.612
	SRR8316894	Third green stage	14.023
	SRR8316900	Third green stage	43.670
	SRR8316901	Third green stage	44.742
	SRR8316898	Complete white stage	28.010
	SRR8316899	Complete white stage	106.134
	SRR8316903	Complete white stage	49.140
	SRR8316902	Silver flowering stage	21.137
	SRR8316904	Silver flowering stage	21.522
	SRR8316905	Silver flowering stage	9.892
	SRR8316906	Gold flowering stage	12.620
	SRR8316907	Gold flowering stage	22.061
	SRR8316908	Gold flowering stage	11.891
SRP132670	SRR6706286	Control	33.574
	SRR6706287	Light intensity 50%	36.349
	SRR6706288	Light intensity 20%	37.205
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	16.265
	CNS0095593	Slightly white alabastrum(diploid) 2	22.749
	CNS0095594	Slightly white alabastrum(diploid) 3	12.312
	CNS0095595	Whole white alabastrum(diploid) 2	19.889
	CNS0095596	Whole white alabastrum(diploid) 3	17.301
	CNS0095597	Whole white alabastrum(diploid) 4	11.606
	CNS0095598	Silvery flower (diploied) 1	13.192
	CNS0095599	Silvery flower (diploied) 2	12.722
	CNS0095600	Silvery flower (diploied) 3	24.797
	CNS0095601	Golden flower (diploid) 1	8.284
	CNS0095602	Golden flower (diploid) 2	11.328
	CNS0095603	Golden flower (diploid) 3	11.889
	CNS0095604	Slightly white alabastrum(tetraploid) 1	21.155
	CNS0095605	Slightly white alabastrum(tetraploid) 2	16.030
	CNS0095606	Slightly white alabastrum(tetraploid) 3	58.746
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.209
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.165
	CNS0095609	Whole white alabastrum(tetraploid) 3	20.654
	CNS0095610	Silvery flower (tetraploid) 1	31.967
	CNS0095611	Silvery flower (tetraploid) 2	17.207
	CNS0095612	Silvery flower (tetraploid) 3	15.888
	CNS0095613	Golden flower (tetraploid) 1	4.309
	CNS0095614	Golden flower (tetraploid) 2	8.383
	CNS0095615	Golden flower (tetraploid) 3	8.678
CRA001975	CRR073297	Stem 1	32.490
	CRR073298	Stem 2	39.457
	CRR073299	Stem 3	55.856
	CRR073300	Leaf 1	53.076
	CRR073301	Leaf 2	43.646
	CRR073302	Leaf 3	48.263
	CRR073303	Juvenile bud 1	54.441
	CRR073304	Juvenile bud 2	47.313
	CRR073305	Juvenile bud 3	73.126
	CRR073306	Third green 1	18.815
	CRR073307	Third green 2	21.420
	CRR073308	Third green 3	21.708
	CRR073309	Second white 1	14.315
	CRR073310	Second white 2	13.242
	CRR073311	Second white 3	6.889
	CRR073312	Silver flowering 1	4.444
	CRR073313	Silver flowering 2	3.040
	CRR073314	Silver flowering 3	3.190
	CRR073315	Gold flowering 1	17.465
	CRR073316	Gold flowering 2	20.007
	CRR073317	Gold flowering 3	16.885
	CRR073318	Tawny withering 1	69.525
	CRR073319	Tawny withering 2	42.611
	CRR073320	Tawny withering 3	74.187