Detail information of GWHGAAZE025673


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007013107.17.13972E-76Phytochrome-associated protein 2 isoform 2 [Theobroma cacao]
Swissprottr|Q38826|IAA8_ARATH2E-63Auxin-responsive protein IAA8
trEMBLtr|A0A061GMJ1|A0A061GMJ1_THECC3E-76Auxin-responsive protein {ECO:0000256|RuleBase:RU004549}
TAIR10AT2G22670.24E-52indoleacetic acid-induced protein 8

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene6576410865766186+
GWHAAZE00000007mRNA6576410865766186+
GWHAAZE00000007exon6576410865764111+
GWHAAZE00000007exon6576451265764745+
GWHAAZE00000007exon6576604165766186+
GWHAAZE00000007CDS6576410865764111+
GWHAAZE00000007CDS6576451265764745+
GWHAAZE00000007CDS6576604165766186+
Transcript Sequence

Network for GWHGAAZE025673

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02309.17AUX_IAA31272.40E-65
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyAUX/IAA

KEGG pathway

KO Enzyme pathway mapID
K14484IAA Plant hormone signal transduction map04075

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE025673.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 3010020030040050060070080090010001100Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf270.160
SRR3591706second leaf67.001
SRR3591707mature leaf67.747
SRR3591708Shoot apex205.244
SRR3591709Stem395.674
SRR3591710White floral bud69.831
SRR3591711White flower42.706
SRR3591712Green floral bud112.010
SRR3591713Yellow flower9.382
SRP173429 SRR8316895Juvenile bud stage 104.379
SRR8316896Juvenile bud stage 89.938
SRR8316897Juvenile bud stage 47.396
SRR8316894Third green stage 38.827
SRR8316900Third green stage 62.894
SRR8316901Third green stage 63.952
SRR8316898Complete white stage 11.669
SRR8316899Complete white stage 166.559
SRR8316903Complete white stage 33.687
SRR8316902Silver flowering stage10.358
SRR8316904Silver flowering stage9.909
SRR8316905Silver flowering stage5.764
SRR8316906Gold flowering stage 19.763
SRR8316907Gold flowering stage 18.823
SRR8316908Gold flowering stage 20.430
SRP132670SRR6706286Control52.516
SRR6706287Light intensity 50%53.126
SRR6706288Light intensity 20%53.667
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1113.866
CNS0095593Slightly white alabastrum(diploid) 2168.349
CNS0095594Slightly white alabastrum(diploid) 399.909
CNS0095595Whole white alabastrum(diploid) 2136.619
CNS0095596Whole white alabastrum(diploid) 349.086
CNS0095597Whole white alabastrum(diploid) 486.225
CNS0095598Silvery flower (diploied) 1214.649
CNS0095599Silvery flower (diploied) 2201.357
CNS0095600Silvery flower (diploied) 372.541
CNS0095601Golden flower (diploid) 1228.463
CNS0095602Golden flower (diploid) 2130.830
CNS0095603Golden flower (diploid) 3119.795
CNS0095604Slightly white alabastrum(tetraploid) 192.346
CNS0095605Slightly white alabastrum(tetraploid) 284.199
CNS0095606Slightly white alabastrum(tetraploid) 3204.256
CNS0095607Whole white alabastrum(tetraploid) 184.799
CNS0095608Whole white alabastrum(tetraploid) 247.507
CNS0095609Whole white alabastrum(tetraploid) 350.970
CNS0095610Silvery flower (tetraploid) 126.653
CNS0095611Silvery flower (tetraploid) 263.326
CNS0095612Silvery flower (tetraploid) 328.593
CNS0095613Golden flower (tetraploid) 128.989
CNS0095614Golden flower (tetraploid) 245.930
CNS0095615Golden flower (tetraploid) 327.281
CRA001975CRR073297Stem 1213.574
CRR073298Stem 2214.845
CRR073299Stem 3265.806
CRR073300Leaf 1222.345
CRR073301Leaf 2221.107
CRR073302Leaf 3209.670
CRR073303Juvenile bud 1188.392
CRR073304Juvenile bud 284.476
CRR073305Juvenile bud 3261.673
CRR073306Third green 122.245
CRR073307Third green 230.327
CRR073308Third green 335.044
CRR073309Second white 123.853
CRR073310Second white 225.557
CRR073311Second white 312.052
CRR073312Silver flowering 15.113
CRR073313Silver flowering 27.797
CRR073314Silver flowering 39.554
CRR073315Gold flowering 1112.298
CRR073316Gold flowering 2120.712
CRR073317Gold flowering 3120.994
CRR073318Tawny withering 1731.405
CRR073319Tawny withering 2693.849
CRR073320Tawny withering 3996.117