Detail information of GWHGAAZE025686


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002325015.27.4616E-112hypothetical protein POPTR_0018s09200g [Populus trichocarpa]
Swissprottr|Q9SL78|ATL12_ARATH9E-86Putative RING-H2 finger protein ATL12 (Precursor)
trEMBLtr|B9ILR6|B9ILR6_POPTR3E-112Uncharacterized protein {ECO:0000313|EMBL:EEF03580.2}
TAIR10AT2G20030.18E-72RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene6594121665942217-
GWHAAZE00000007mRNA6594121665942217-
GWHAAZE00000007exon6594121665942217-
GWHAAZE00000007CDS6594121665942217-
Transcript Sequence

Network for GWHGAAZE025686

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.7zf-RING_2621051.20E-11
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.093
SRR3591706second leaf0.419
SRR3591707mature leaf0.282
SRR3591708Shoot apex0.685
SRR3591709Stem0.474
SRR3591710White floral bud1.133
SRR3591711White flower2.365
SRR3591712Green floral bud2.958
SRR3591713Yellow flower3.411
SRP173429 SRR8316895Juvenile bud stage 0.438
SRR8316896Juvenile bud stage 0.859
SRR8316897Juvenile bud stage 0.278
SRR8316894Third green stage 0.972
SRR8316900Third green stage 2.008
SRR8316901Third green stage 2.133
SRR8316898Complete white stage 0.234
SRR8316899Complete white stage 1.631
SRR8316903Complete white stage 0.000
SRR8316902Silver flowering stage1.166
SRR8316904Silver flowering stage1.928
SRR8316905Silver flowering stage0.869
SRR8316906Gold flowering stage 8.504
SRR8316907Gold flowering stage 9.515
SRR8316908Gold flowering stage 7.365
SRP132670SRR6706286Control3.344
SRR6706287Light intensity 50%3.031
SRR6706288Light intensity 20%3.570
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.395
CNS0095593Slightly white alabastrum(diploid) 21.187
CNS0095594Slightly white alabastrum(diploid) 31.897
CNS0095595Whole white alabastrum(diploid) 20.788
CNS0095596Whole white alabastrum(diploid) 30.943
CNS0095597Whole white alabastrum(diploid) 42.297
CNS0095598Silvery flower (diploied) 10.772
CNS0095599Silvery flower (diploied) 20.380
CNS0095600Silvery flower (diploied) 31.118
CNS0095601Golden flower (diploid) 11.198
CNS0095602Golden flower (diploid) 20.835
CNS0095603Golden flower (diploid) 30.993
CNS0095604Slightly white alabastrum(tetraploid) 11.383
CNS0095605Slightly white alabastrum(tetraploid) 21.081
CNS0095606Slightly white alabastrum(tetraploid) 30.151
CNS0095607Whole white alabastrum(tetraploid) 11.710
CNS0095608Whole white alabastrum(tetraploid) 21.104
CNS0095609Whole white alabastrum(tetraploid) 31.863
CNS0095610Silvery flower (tetraploid) 11.590
CNS0095611Silvery flower (tetraploid) 20.435
CNS0095612Silvery flower (tetraploid) 30.625
CNS0095613Golden flower (tetraploid) 12.332
CNS0095614Golden flower (tetraploid) 21.942
CNS0095615Golden flower (tetraploid) 30.802
CRA001975CRR073297Stem 11.352
CRR073298Stem 21.914
CRR073299Stem 32.389
CRR073300Leaf 11.176
CRR073301Leaf 20.792
CRR073302Leaf 31.415
CRR073303Juvenile bud 10.371
CRR073304Juvenile bud 21.656
CRR073305Juvenile bud 31.141
CRR073306Third green 11.106
CRR073307Third green 20.838
CRR073308Third green 30.693
CRR073309Second white 11.691
CRR073310Second white 24.376
CRR073311Second white 32.489
CRR073312Silver flowering 13.204
CRR073313Silver flowering 22.495
CRR073314Silver flowering 30.461
CRR073315Gold flowering 10.041
CRR073316Gold flowering 20.278
CRR073317Gold flowering 30.171
CRR073318Tawny withering 11.129
CRR073319Tawny withering 20.953
CRR073320Tawny withering 30.710