Gene detail

Detail information of GWHGAAZE025690

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP40412.1	1.9605E-118	hypothetical protein JCGZ_03762 [Jatropha curcas]
COG	YP_001414913.1	2E-52	ubiquinone/menaquinone biosynthesis methyltransferase
Swissprot	tr\|Q9LVC8\|COQ5_ARATH	2E-105	2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial (Precursor)
trEMBL	tr\|A0A067KW81\|A0A067KW81_JATCU	7E-119	Uncharacterized protein {ECO:0000313\|EMBL:KDP40412.1}
TAIR10	AT5G57300.3	2E-85	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	66050661	66058171	-
GWHAAZE00000007	mRNA	66050661	66058171	-
GWHAAZE00000007	exon	66058075	66058171	-
GWHAAZE00000007	exon	66057911	66057976	-
GWHAAZE00000007	exon	66056839	66057037	-
GWHAAZE00000007	exon	66056667	66056728	-
GWHAAZE00000007	exon	66055565	66055599	-
GWHAAZE00000007	exon	66053169	66053334	-
GWHAAZE00000007	exon	66052640	66052784	-
GWHAAZE00000007	exon	66050661	66050736	-
GWHAAZE00000007	CDS	66058075	66058171	-
GWHAAZE00000007	CDS	66057911	66057976	-
GWHAAZE00000007	CDS	66056839	66057037	-
GWHAAZE00000007	CDS	66056667	66056728	-
GWHAAZE00000007	CDS	66055565	66055599	-
GWHAAZE00000007	CDS	66053169	66053334	-
GWHAAZE00000007	CDS	66052640	66052784	-
GWHAAZE00000007	CDS	66050661	66050736	-

Transcript Sequence
>GWHTAAZE025724 ATGATGGCATTGAGGATGAGTGCTCGTACTTTGAAGAGTATGCTGTTGCCCATGTTCACTCCAGCGTCCATGTTGCATTCTCACACTACGAGTTTTGTTTCAATTTACAATGCTAAATCTGATGTTTGTGTTGCTTATAAATTGGTTATTATCAACGTATGCAATCCATTTGTTGTACCTCGGTCCACTTTCACAATTTTAGATGCTATGTTGACTTCCCAAGGTTACATTTCAGGATTTAAAGAAGTACGGGAAGAAGAAAAGAGCCAAATGGTTGGTAATGTCTTCACCAATGTCGCTTCTAGCTATGACCTTATGAATGATTTGATGAGTGCCGGACTACACAGATTATGGAAGGAAAGATTGGTTTCCAAATTGAATCCATTTCCTGGAATTAAGCATCTTGATGTTGCTGGCGGGACAGATCAGCTCTACGTAATTCGTTATGGCAGAATCAATGGGATGTGGGATGTTGCTTTCAGGATCCTAGAAACTGTTAACAGTGTTAGTCGCAGAGCCATACAGGATATGCTTGAAAGTAACTTGCGGGAGGATACTCAGATTTATGTATGTGATATCAACCCAAATATGTTGAACGTTGGTAAAAAGCGGGCCCAAGAGAGAGGTCTTGGAGAAGATGGGTCCCTCATTTGGGTGGAGGGAGATGCAGAAGCCCTGAAATTTGAAGATGAATCGATGGATGGATACACAATTGCATTTGGGATTAGAAATGTTACCCACATAGAGAAAGTTATTGCTGAAGCTTATAGGGTGCTTAAAAGGGGAGGAAGATTCCTTTGCCTTGAACTTAGCCATGTTGAAACTCCAGTTTTCAAGCAGTTGTGA

Network for GWHGAAZE025690

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01209.19	Ubie_methyltran	87	280	3.50E-46

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K06127	COQ5	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Ubiquinone and other terpenoid-quinone biosynthesis	map00130

Gene Ontology

GO term	Ontology	Name
GO:0008168	molecular_function	methyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.261
	SRR3591706	second leaf	4.268
	SRR3591707	mature leaf	3.246
	SRR3591708	Shoot apex	3.958
	SRR3591709	Stem	3.921
	SRR3591710	White floral bud	8.270
	SRR3591711	White flower	10.795
	SRR3591712	Green floral bud	8.525
	SRR3591713	Yellow flower	12.850
SRP173429	SRR8316895	Juvenile bud stage	5.316
	SRR8316896	Juvenile bud stage	7.154
	SRR8316897	Juvenile bud stage	3.186
	SRR8316894	Third green stage	4.666
	SRR8316900	Third green stage	8.073
	SRR8316901	Third green stage	9.437
	SRR8316898	Complete white stage	2.247
	SRR8316899	Complete white stage	7.181
	SRR8316903	Complete white stage	3.591
	SRR8316902	Silver flowering stage	2.546
	SRR8316904	Silver flowering stage	4.008
	SRR8316905	Silver flowering stage	2.018
	SRR8316906	Gold flowering stage	5.960
	SRR8316907	Gold flowering stage	3.950
	SRR8316908	Gold flowering stage	4.599
SRP132670	SRR6706286	Control	5.262
	SRR6706287	Light intensity 50%	5.476
	SRR6706288	Light intensity 20%	6.095
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.946
	CNS0095593	Slightly white alabastrum(diploid) 2	5.752
	CNS0095594	Slightly white alabastrum(diploid) 3	2.825
	CNS0095595	Whole white alabastrum(diploid) 2	4.723
	CNS0095596	Whole white alabastrum(diploid) 3	4.976
	CNS0095597	Whole white alabastrum(diploid) 4	3.938
	CNS0095598	Silvery flower (diploied) 1	3.056
	CNS0095599	Silvery flower (diploied) 2	1.216
	CNS0095600	Silvery flower (diploied) 3	2.117
	CNS0095601	Golden flower (diploid) 1	3.081
	CNS0095602	Golden flower (diploid) 2	3.080
	CNS0095603	Golden flower (diploid) 3	2.977
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.347
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.235
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.983
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.294
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.492
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.710
	CNS0095610	Silvery flower (tetraploid) 1	5.184
	CNS0095611	Silvery flower (tetraploid) 2	2.918
	CNS0095612	Silvery flower (tetraploid) 3	4.062
	CNS0095613	Golden flower (tetraploid) 1	2.643
	CNS0095614	Golden flower (tetraploid) 2	3.755
	CNS0095615	Golden flower (tetraploid) 3	2.381
CRA001975	CRR073297	Stem 1	4.770
	CRR073298	Stem 2	3.070
	CRR073299	Stem 3	0.696
	CRR073300	Leaf 1	5.044
	CRR073301	Leaf 2	5.172
	CRR073302	Leaf 3	1.029
	CRR073303	Juvenile bud 1	1.574
	CRR073304	Juvenile bud 2	0.543
	CRR073305	Juvenile bud 3	0.725
	CRR073306	Third green 1	0.013
	CRR073307	Third green 2	0.458
	CRR073308	Third green 3	0.255
	CRR073309	Second white 1	0.101
	CRR073310	Second white 2	0.532
	CRR073311	Second white 3	0.430
	CRR073312	Silver flowering 1	0.282
	CRR073313	Silver flowering 2	0.246
	CRR073314	Silver flowering 3	0.145
	CRR073315	Gold flowering 1	0.525
	CRR073316	Gold flowering 2	0.269
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	1.717
	CRR073319	Tawny withering 2	1.365
	CRR073320	Tawny withering 3	1.302