Gene detail

Detail information of GWHGAAZE025697

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011048329.1	0	PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A isoform X1 [Populus euphratica]
COG	YP_008797149.1	2E-35	conserved hypothetical protein
Swissprot	tr\|Q93ZY3\|STT3A_ARATH	0	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A
trEMBL	tr\|A0A061GNI6\|A0A061GNI6_THECC	0	Staurosporin and temperature sensitive 3-like A isoform 2 {ECO:0000313\|EMBL:EOY30682.1}
TAIR10	AT5G19690.1	0	staurosporin and temperature sensitive 3-like A

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	66204818	66219529	-
GWHAAZE00000007	mRNA	66204818	66219529	-
GWHAAZE00000007	exon	66219311	66219529	-
GWHAAZE00000007	exon	66219068	66219130	-
GWHAAZE00000007	exon	66218770	66218801	-
GWHAAZE00000007	exon	66216071	66216142	-
GWHAAZE00000007	exon	66215800	66215905	-
GWHAAZE00000007	exon	66215633	66215683	-
GWHAAZE00000007	exon	66215188	66215283	-
GWHAAZE00000007	exon	66214852	66214911	-
GWHAAZE00000007	exon	66214678	66214791	-
GWHAAZE00000007	exon	66214420	66214506	-
GWHAAZE00000007	exon	66213176	66213279	-
GWHAAZE00000007	exon	66212731	66212826	-
GWHAAZE00000007	exon	66211306	66211426	-
GWHAAZE00000007	exon	66211100	66211180	-
GWHAAZE00000007	exon	66210853	66210984	-
GWHAAZE00000007	exon	66210003	66210242	-
GWHAAZE00000007	exon	66209780	66209872	-
GWHAAZE00000007	exon	66208954	66209097	-
GWHAAZE00000007	exon	66206807	66206993	-
GWHAAZE00000007	exon	66206613	66206710	-
GWHAAZE00000007	exon	66205627	66205706	-
GWHAAZE00000007	exon	66205438	66205525	-
GWHAAZE00000007	exon	66205130	66205219	-
GWHAAZE00000007	exon	66204818	66204880	-
GWHAAZE00000007	five_prime_UTR	66219428	66219529	-
GWHAAZE00000007	CDS	66219311	66219427	-
GWHAAZE00000007	CDS	66219068	66219130	-
GWHAAZE00000007	CDS	66218770	66218801	-
GWHAAZE00000007	CDS	66216071	66216142	-
GWHAAZE00000007	CDS	66215800	66215905	-
GWHAAZE00000007	CDS	66215633	66215683	-
GWHAAZE00000007	CDS	66215188	66215283	-
GWHAAZE00000007	CDS	66214852	66214911	-
GWHAAZE00000007	CDS	66214678	66214791	-
GWHAAZE00000007	CDS	66214420	66214506	-
GWHAAZE00000007	CDS	66213176	66213279	-
GWHAAZE00000007	CDS	66212731	66212826	-
GWHAAZE00000007	CDS	66211306	66211426	-
GWHAAZE00000007	CDS	66211100	66211180	-
GWHAAZE00000007	CDS	66210853	66210984	-
GWHAAZE00000007	CDS	66210003	66210242	-
GWHAAZE00000007	CDS	66209780	66209872	-
GWHAAZE00000007	CDS	66208954	66209097	-
GWHAAZE00000007	CDS	66206807	66206993	-
GWHAAZE00000007	CDS	66206613	66206710	-
GWHAAZE00000007	CDS	66205627	66205706	-
GWHAAZE00000007	CDS	66205438	66205525	-
GWHAAZE00000007	CDS	66205130	66205219	-
GWHAAZE00000007	CDS	66204818	66204880	-

Transcript Sequence
>GWHTAAZE025731 TACTCTCGTCGTCAGTCCCGACCTACATACAAAACCCTCTCTCTATCGCTAAGACTCTTAACTCTTTCTCTCTCTTAACTTCAGAGCTTAGTTTGGTCATCAATGGCGGCAATAGAATCCGCGAAGGATTCGACTCTTCGCTACGCCTTTGGAAATGTTCTCGCATTCTTCATCCTTGTCTTAATTGGCGTGCTCGCATTTTCGATCCGTATCTTCTCTGTTATTAAGTATGAAAGCGTAATTCACGAGTTCGATCCTTATTTCAATTACAGAGTTACTCAGGTGGGAGTTGTTCTACTCGATCTCAAAATCTGGTATCCTCTTGGGCGTGTGATTGGTGGAACTGTTTATCCTGGATTGACGTTGACAGCAGGCACCTTGTGGTGGGTACTGAATTCCTTGAATATTCCTCTATCTGTGGAAACTGTTTGTGTATTTACTGCTCCTATATTCTCTGCTTTTGCCGCATGGGCAACCTACCTCTTGACTAAGGAAGTTAAGGGCACAGGTGCTGGACTGACTGCAGCAGTTCTTTTGGCCATGGTGCCATCCTATATATCTCGGTCTGTTGCTGGAAGCTATGACAATGAAGCTGTAGCTATATTTGCTTTGATCTTCACTTTCTATCTCTATATCAAGACATTGAACACAGGATCCCTCTTCTACGCTACTTTAAATGCCATAGCATACTTCTACATGGTTTGCTCTTGGGGTGGGTACACCTTTATCATCAACCTCATACCGATGCATGCACTTCTCTGCATTGTAACTGGTCGCTATTCTTCTCGGTTGTACATTGCATATGCTCCACTTGTTGTATTGGGGACATTGTTGGCTGCATTGGTGCCTGTAGTTGGTTTTAATGCTGTCTTGACATCAGAACATTTTGCTTCATTTTTGGTTTTCATTATTATCCATGTGGTGGCTCTTGCTTACTACATCAAAGGAATTCTCACTCCAAAAATGTTTAGAGTTGCGGTTACACTCGTTGTATCTGTTGGCCTGGTAGTATGTTGTGCTGTGATAGCAGTACTTGTAGCATTGGTAGCTTCTAGTCCAACGAAGGGATGGAGTGGACGAAGTTTAAGCCTGCTTGATCCCACTTATGCAAGCAAGTACATACCGATTATTGCGAGTGTTAGTGAACATCAACCACCTACGTGGCCTTCTTACTTTATGGACATTAATGTTTTGGCATTCTTGGTTCCAGCTGGCATCATTGCATGCTTTTTGCCACTATCGGATGCAAGCTCATTTGTGGTCCTTTACATAGTAACATCAGTATATTTCTCTGGAGTTATGGTGCGCCTAATGCTTGTGCTTGCACCAGCGGCATGCATAATGTCTGGTATTGCTCTTTCTGAAGCCTTTGCTGTCTTCACTAGATCAATCAAATTCCAACTACCTGGCTTAGCACAAATTTCTGAGATTAATGCAGGGGATACTAGTTCCGATGGTGTTGTTGCACAAAATGATGTGGTGAAGACTGAAGTTGAAGACTTACCGAAGGAACGGCCTTCAAGGAAGAACAAGAAGAAGGAAAAGGAAAGGGAAAAGGAGAATGTGGAAAAAGTTTCTATTAAAAAACAGGTTGAGAAGAGGCTTCAGGTTTTACCCATGGAGGCATCTTTCATTGCTCTACTCTTACTTGTGTTGCTGGGTGCCTTTTATGTTCTATTAAGAGTTAAGACACGCGCAAAATGTGGGTGTGATGCTGTGTTTCTAAGCATCTCTCATCACATGTGTGCATCATGCGATGTTGTAAAAGTCCATTGTGTCTGGGCAGCAGCGGAAGCGTATTCAGCCCCTTCTATTGTGCTAACATCTCATTCGCACGATGGTCTTCATGTTTTTGATGATTTTAGAGAGGCTTATGCATGGTTGAGCCACAATACTGAAGTGGATGATAAAGTTGCATCTTGGTGGGACTATGGTTACCAAACAACTGCAATGGCTAACCGCACTGTCATTGTTGACAATAATACCTGGAACAACACACATATTGCAACTGTTGGTACCGCCATGTCATCACCTGAAAAGGCAGCTTGGGAAATTTTTAATTCTTTGGATGTTAAATACGTTCTTGTCGTCTTTGGAGGTCTTGTTGGCTACCCTAGTGATGATATTAATAAGTTCTTATGGATGGTTCGTATTGGAGGGGGTGTATTCCCTCACATCAAGGAGCCCGATTATCTGAGAGATGGTCAGTACCGGATTGATAACCAGGCTACTCCAACCATGCTAAACTGCCTCATGTACAAACTATCTTATTACAGATTTGTGGAGACTGATGGCAAAGGATTTGACAGAGTAAGGCGGACTGAAATTGGAAAGAAAAGATTTAAACTAACCCATTTTGAGGAGGTATTCACAACCCACCATTGGATGGTTCGGATATACAAACTAAAAGCTCCAAAGAACAGGATCAGGGGAAAGTCACTGAAATCTAAATCGAAAGTTAGCTCAACAAGAAGCTCGAATAGAAGCGGAACAAGAAAGAAGAATCCATGGCATTAG

Network for GWHGAAZE025697

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02516.15	STT3	19	429	2.80E-87

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K07151	STT3	Metabolic pathways	map01100
		N-Glycan biosynthesis	map00510
		Various types of N-glycan biosynthesis	map00513
		Protein processing in endoplasmic reticulum	map04141

Gene Ontology

GO term	Ontology	Name
GO:0006486	biological_process	protein glycosylation
GO:0016020	cellular_component	membrane
GO:0004576	molecular_function	oligosaccharyl transferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	65.457
	SRR3591706	second leaf	36.334
	SRR3591707	mature leaf	24.806
	SRR3591708	Shoot apex	45.711
	SRR3591709	Stem	37.509
	SRR3591710	White floral bud	31.035
	SRR3591711	White flower	39.851
	SRR3591712	Green floral bud	41.024
	SRR3591713	Yellow flower	28.201
SRP173429	SRR8316895	Juvenile bud stage	34.656
	SRR8316896	Juvenile bud stage	50.372
	SRR8316897	Juvenile bud stage	22.263
	SRR8316894	Third green stage	19.782
	SRR8316900	Third green stage	44.007
	SRR8316901	Third green stage	43.687
	SRR8316898	Complete white stage	8.805
	SRR8316899	Complete white stage	44.195
	SRR8316903	Complete white stage	19.686
	SRR8316902	Silver flowering stage	12.940
	SRR8316904	Silver flowering stage	20.926
	SRR8316905	Silver flowering stage	7.697
	SRR8316906	Gold flowering stage	30.660
	SRR8316907	Gold flowering stage	29.734
	SRR8316908	Gold flowering stage	32.376
SRP132670	SRR6706286	Control	29.177
	SRR6706287	Light intensity 50%	29.023
	SRR6706288	Light intensity 20%	32.882
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	38.283
	CNS0095593	Slightly white alabastrum(diploid) 2	36.979
	CNS0095594	Slightly white alabastrum(diploid) 3	37.419
	CNS0095595	Whole white alabastrum(diploid) 2	27.913
	CNS0095596	Whole white alabastrum(diploid) 3	30.304
	CNS0095597	Whole white alabastrum(diploid) 4	25.454
	CNS0095598	Silvery flower (diploied) 1	34.496
	CNS0095599	Silvery flower (diploied) 2	29.025
	CNS0095600	Silvery flower (diploied) 3	24.753
	CNS0095601	Golden flower (diploid) 1	24.589
	CNS0095602	Golden flower (diploid) 2	28.838
	CNS0095603	Golden flower (diploid) 3	28.535
	CNS0095604	Slightly white alabastrum(tetraploid) 1	33.033
	CNS0095605	Slightly white alabastrum(tetraploid) 2	28.740
	CNS0095606	Slightly white alabastrum(tetraploid) 3	59.917
	CNS0095607	Whole white alabastrum(tetraploid) 1	20.270
	CNS0095608	Whole white alabastrum(tetraploid) 2	14.838
	CNS0095609	Whole white alabastrum(tetraploid) 3	38.925
	CNS0095610	Silvery flower (tetraploid) 1	30.565
	CNS0095611	Silvery flower (tetraploid) 2	20.831
	CNS0095612	Silvery flower (tetraploid) 3	14.387
	CNS0095613	Golden flower (tetraploid) 1	9.561
	CNS0095614	Golden flower (tetraploid) 2	24.191
	CNS0095615	Golden flower (tetraploid) 3	6.523
CRA001975	CRR073297	Stem 1	35.098
	CRR073298	Stem 2	32.417
	CRR073299	Stem 3	27.900
	CRR073300	Leaf 1	31.764
	CRR073301	Leaf 2	30.862
	CRR073302	Leaf 3	24.657
	CRR073303	Juvenile bud 1	22.421
	CRR073304	Juvenile bud 2	19.073
	CRR073305	Juvenile bud 3	24.359
	CRR073306	Third green 1	3.627
	CRR073307	Third green 2	3.910
	CRR073308	Third green 3	5.693
	CRR073309	Second white 1	4.224
	CRR073310	Second white 2	3.468
	CRR073311	Second white 3	2.603
	CRR073312	Silver flowering 1	5.579
	CRR073313	Silver flowering 2	8.022
	CRR073314	Silver flowering 3	8.438
	CRR073315	Gold flowering 1	11.736
	CRR073316	Gold flowering 2	22.117
	CRR073317	Gold flowering 3	9.618
	CRR073318	Tawny withering 1	29.872
	CRR073319	Tawny withering 2	26.395
	CRR073320	Tawny withering 3	28.948