Gene detail

Detail information of GWHGAAZE025705

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006361853.1	0	PREDICTED: serine--tRNA ligase-like [Solanum tuberosum]
COG	YP_003424689.1	5E-140	seryl-tRNA synthetase SerS
Swissprot	tr\|O81983\|SYS_HELAN	0	Serine--tRNA ligase
trEMBL	tr\|M1CSB1\|M1CSB1_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400073593}
TAIR10	AT5G27470.1	0	seryl-tRNA synthetase / serine--tRNA ligase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	66403138	66411573	+
GWHAAZE00000007	mRNA	66403138	66411573	+
GWHAAZE00000007	exon	66403138	66403270	+
GWHAAZE00000007	exon	66403384	66403454	+
GWHAAZE00000007	exon	66405151	66405312	+
GWHAAZE00000007	exon	66405393	66405498	+
GWHAAZE00000007	exon	66407108	66407301	+
GWHAAZE00000007	exon	66408634	66408737	+
GWHAAZE00000007	exon	66408826	66409009	+
GWHAAZE00000007	exon	66409622	66409801	+
GWHAAZE00000007	exon	66410969	66411573	+
GWHAAZE00000007	CDS	66403138	66403270	+
GWHAAZE00000007	CDS	66403384	66403454	+
GWHAAZE00000007	CDS	66405151	66405312	+
GWHAAZE00000007	CDS	66405393	66405498	+
GWHAAZE00000007	CDS	66407108	66407301	+
GWHAAZE00000007	CDS	66408634	66408737	+
GWHAAZE00000007	CDS	66408826	66409009	+
GWHAAZE00000007	CDS	66409622	66409801	+
GWHAAZE00000007	CDS	66410969	66411181	+
GWHAAZE00000007	three_prime_UTR	66411182	66411573	+

Transcript Sequence
>GWHTAAZE025739 ATGTTGGACATAAATCTCTTCAGGGAGGATAAAGGCAATAATCCCGAAATCATAAGGGAGTCTCAGCGGCGTCGTTTCGCAAATGTTGATCTTGTTGATGAGGTCATTGCTCTTGACAGAGAATGGAGACAGCGTCAATATGAGCTAGACAATTTACGAAAAGATTTCAACAAGATCAACAAAGAAGTTGCGAAACTCAAAATTTCGGGTGAGGATGCAAGCTCAAAGATTAAAGATACTGAGGAGAATAAGCAATTGACTGCAAAGAAAGTAGCAGAAGTTGCGGAGGCCAAAACAGCACTAGATTCAAGATTGGAAATAATCGGAAACCTTGTGCATGATTCAGTTCCAGTTAGCAATGATGAGGCAAACAATGCTGTGGTTCGAACTTGGGGGGAGAAGCGCATGGAACCAAAACTGAAAAATCACGTTGAGCTTGTTGAGCTTCTTGGAATAGCAGATAATATAAAAGGTGCTGATGTAGCGGGAGGTAGAGGTTACTATCTCAAAGGAGACGGTGTTCGTCTTAATCAAGCTCTAATTAATTTTGGTCTTGATTTTTTGGAGAAGAGGGGTTACACTGCATTGCAGACTCCGTTCTTTATGAAAAAAGACATCATGGCAAAGTGTGCTCAATTAGCCCAATTTGATGAAGAACTATACAAGGTAACTGGTGAGGGAGAGGACAAATATCTGATTGCAACGGCTGAACAACCGCTTTGTGCCTACCATATAGATGATTGGATTCATCCCACACAGCTGCCGTTAAGATATGCTGGATACTCATCGTGCTTTCGTAAGGAAGCTGGGTCTCATGGTCGAGATACCCTCGGAATTTTCCGAGTTCATCAGTTTGAGAAGGTGGAACAGTTCTGTATTACCAGCCCAAATGGCAATGAATCCTGGGAAATGCACGAGGAAATGATAAAAAACTCCGAGGACTTTTACAAGATGCTAAAACTTCCTTATCAAATAGTGGCTATAGTGTCTGGTGCTTTGAATGACGCGGCTGCAAAGAAGTTTGATTTAGAAGCATGGTTTCCTGCATCCAGTGCTTATAGAGAGCTGGTTTCCTGCTCCAACTGTACGGACTATCAGGCCCGAAAGCTAGAGATTCGATTTGGGCAAAAAAAGAGCAATGAGCAAGCGAAACTATACGTGCATCTGTTGAATTCGACGCTGACAGCAACAGAGAGGACAATGTGCTGCATTCTCGAGAATTACCAAAAGGAGGATGGCGTCGAAGTACCCGAAGTCCTTCGCCCATTCATGGGCGGCAAGTCCTTCCTCCCTTTCCAGAAACCACCCCCTGGTAAGGAAGCCAAGGGTAAGAAATCCAAGGCCTAGCTAGAATCTCTCTATAACAGAAACCCCTTGGACCATATTCTGTCTTATTTTCAACAGTAGTACATTCACCCTTCAATCTCCCACGACACACAAAAAAAAAGGCGTGGTTGGGGAAGAAATAGTACTCACATAAGCGGATCTTTTGTTTGCTGTTGTATGCTGCTGAAGGATTACATATATTTTGTCATTTTCAAGATGGATTTGACATTGTCATTTGTTTGCTTTGTCCTTGTTATGTTGTTTTCCAACTTTTGACCCTTCTTGAAAGAGAGATGATCGGTTTGTGTTTAAAATTGGAGCTTTTGGCAAAAGAATGAGGAAATTGAGAGCCAACTTCTTTGTTAGAATTATACAGGAATTTATTGATTTAGGAATGTGCAAAATGTTAACTA

Network for GWHGAAZE025705

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02403.23	Seryl_tRNA_N	1	112	3.30E-24
PF00587.26	tRNA-synt_2b	221	408	2.30E-34

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01875	SARS, serS	Aminoacyl-tRNA biosynthesis	map00970

Gene Ontology

GO term	Ontology	Name
GO:0006418	biological_process	tRNA aminoacylation for protein translation
GO:0006434	biological_process	seryl-tRNA aminoacylation
GO:0000166	molecular_function	nucleotide binding
GO:0004812	molecular_function	aminoacyl-tRNA ligase activity
GO:0005524	molecular_function	ATP binding
GO:0004828	molecular_function	serine-tRNA ligase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	81.960
	SRR3591706	second leaf	40.471
	SRR3591707	mature leaf	42.927
	SRR3591708	Shoot apex	64.053
	SRR3591709	Stem	62.345
	SRR3591710	White floral bud	63.838
	SRR3591711	White flower	102.142
	SRR3591712	Green floral bud	81.133
	SRR3591713	Yellow flower	72.932
SRP173429	SRR8316895	Juvenile bud stage	42.536
	SRR8316896	Juvenile bud stage	56.501
	SRR8316897	Juvenile bud stage	30.563
	SRR8316894	Third green stage	26.925
	SRR8316900	Third green stage	95.344
	SRR8316901	Third green stage	78.679
	SRR8316898	Complete white stage	33.596
	SRR8316899	Complete white stage	105.600
	SRR8316903	Complete white stage	50.780
	SRR8316902	Silver flowering stage	38.190
	SRR8316904	Silver flowering stage	50.842
	SRR8316905	Silver flowering stage	21.620
	SRR8316906	Gold flowering stage	69.783
	SRR8316907	Gold flowering stage	69.898
	SRR8316908	Gold flowering stage	85.303
SRP132670	SRR6706286	Control	82.496
	SRR6706287	Light intensity 50%	82.687
	SRR6706288	Light intensity 20%	86.803
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	60.292
	CNS0095593	Slightly white alabastrum(diploid) 2	68.818
	CNS0095594	Slightly white alabastrum(diploid) 3	59.739
	CNS0095595	Whole white alabastrum(diploid) 2	59.665
	CNS0095596	Whole white alabastrum(diploid) 3	59.741
	CNS0095597	Whole white alabastrum(diploid) 4	56.220
	CNS0095598	Silvery flower (diploied) 1	57.003
	CNS0095599	Silvery flower (diploied) 2	53.330
	CNS0095600	Silvery flower (diploied) 3	84.465
	CNS0095601	Golden flower (diploid) 1	46.034
	CNS0095602	Golden flower (diploid) 2	67.666
	CNS0095603	Golden flower (diploid) 3	64.666
	CNS0095604	Slightly white alabastrum(tetraploid) 1	70.522
	CNS0095605	Slightly white alabastrum(tetraploid) 2	66.018
	CNS0095606	Slightly white alabastrum(tetraploid) 3	108.502
	CNS0095607	Whole white alabastrum(tetraploid) 1	50.290
	CNS0095608	Whole white alabastrum(tetraploid) 2	47.483
	CNS0095609	Whole white alabastrum(tetraploid) 3	93.304
	CNS0095610	Silvery flower (tetraploid) 1	101.749
	CNS0095611	Silvery flower (tetraploid) 2	102.844
	CNS0095612	Silvery flower (tetraploid) 3	77.496
	CNS0095613	Golden flower (tetraploid) 1	57.872
	CNS0095614	Golden flower (tetraploid) 2	75.917
	CNS0095615	Golden flower (tetraploid) 3	67.687
CRA001975	CRR073297	Stem 1	54.596
	CRR073298	Stem 2	50.666
	CRR073299	Stem 3	57.074
	CRR073300	Leaf 1	66.918
	CRR073301	Leaf 2	60.981
	CRR073302	Leaf 3	66.668
	CRR073303	Juvenile bud 1	75.692
	CRR073304	Juvenile bud 2	59.527
	CRR073305	Juvenile bud 3	92.863
	CRR073306	Third green 1	27.624
	CRR073307	Third green 2	25.605
	CRR073308	Third green 3	31.444
	CRR073309	Second white 1	49.650
	CRR073310	Second white 2	36.079
	CRR073311	Second white 3	30.896
	CRR073312	Silver flowering 1	27.038
	CRR073313	Silver flowering 2	30.925
	CRR073314	Silver flowering 3	19.240
	CRR073315	Gold flowering 1	36.055
	CRR073316	Gold flowering 2	40.813
	CRR073317	Gold flowering 3	44.844
	CRR073318	Tawny withering 1	53.427
	CRR073319	Tawny withering 2	50.955
	CRR073320	Tawny withering 3	55.784