Gene detail

Detail information of GWHGAAZE025716

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007013011.1	0	Pectin lyase-like superfamily protein isoform 1 [Theobroma cacao]
COG	YP_003404589.1	3E-69	pectinesterase
Swissprot	tr\|Q8VYZ3\|PME53_ARATH	0	Probable pectinesterase 53 (Precursor)
trEMBL	tr\|A0A061GL86\|A0A061GL86_THECC	0	Pectinesterase {ECO:0000256\|RuleBase:RU000589}
TAIR10	AT5G19730.1	1E-170	Pectin lyase-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	66666952	66671567	-
GWHAAZE00000007	mRNA	66666952	66671567	-
GWHAAZE00000007	exon	66671200	66671567	-
GWHAAZE00000007	exon	66670254	66670443	-
GWHAAZE00000007	exon	66669621	66669827	-
GWHAAZE00000007	exon	66668598	66668833	-
GWHAAZE00000007	exon	66666952	66667099	-
GWHAAZE00000007	CDS	66671200	66671567	-
GWHAAZE00000007	CDS	66670254	66670443	-
GWHAAZE00000007	CDS	66669621	66669827	-
GWHAAZE00000007	CDS	66668598	66668833	-
GWHAAZE00000007	CDS	66666952	66667099	-

Transcript Sequence
>GWHTAAZE025750 ATGTCAAATTTTACACCCATTTTTACCACCACCATCATTCTTCTTCTTCTTGTTAATTCAACTCCCACATTATGCCACACTAAGGGTATTAGACCCAAAAAAAGTACTCAAGGGAATAAGCAATTAAGAGTAAATATGACACAAACCCAATATTCAGAACAACAATTCATGAGGTGGGTCAGATTTGTGGGTACACTTAAACACTCCCTCTTCTCCACAGCTAAGAACAAACTCTTCCCTTCTCACACTCTCACCGTTGATAAGAATCCGGCCACCGGAGACTTCACGTCAATTCAAGCTGCCATTGATTCTTTGCCTTTCATTAATCTTGTTAGAGTTGTAATCAAAGTCCATGCAGGGGTTTACAAGGAGAAGGTAATTATACCTCCATTAAAATCATTCATAGCAATACAAGGGGCAGGGGCAGAAAAGACAGTTGTGCAATGGGGAGATACAGCCCAAACAATTGGCTCAAAAGGCCAGCCTATTGGAACCTATGGCTCTGCTACCTTTGCTGTTAATTCCCCTTATTTCATTGCCAAGAACATTACTTTTAAGAATACAAGGCCAATACCACCACCGGGAGCTATTGGGAAGCAAGCAGTAGCATTTAGGATTTCAGCAGATACTGCAGCATTTGTAGGTTGTAGGTTCTTGGGTGCACAAGACACTCTGTATGACCATTTGGGTAGGCATTATTACAAGGATTGCTACATTGAAGGCTCTGTGGACTTCATCTTTGGGAATGGTCTCTCCCTATTTGAGGGATGTCACGTACATGCAATAGCACCAATAACAGGGGCCCTAACAGCACAGGGGAGGAGTAGCCTACTAGAGGACACAGGATTCTCATTTTTGAAGTGTAAGGTGACTGGGTCTGGGGCATTGTACCTTGGGAGGGCTTGGGGTCCCTTCTCTAGGGTAGTCTTTGCCTATACTTATATGGACGACATTATCATCCCTAAAGGCTGGTACAATTGGGGTGACCCTAATAGAGAAATGACAGTGTTTTATGGGCAATACAAGTGCAGTGGACCAGGGGCAAGGTTTGCAGGAAGAGTGTCATGGTCAAGGGAACTTACTGATGAAGAAGCCAAGCCTTTTATATCCCTTGGTTTCATTGACGGCTCTGAATGGATCAAATTGTAA

Network for GWHGAAZE025716

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01095.20	Pectinesterase	91	376	2.60E-73

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01051	E3.1.1.11	Metabolic pathways	map01100
		Pentose and glucuronate interconversions	map00040
		Two-component system	map02020

Gene Ontology

GO term	Ontology	Name
GO:0042545	biological_process	cell wall modification
GO:0030599	molecular_function	pectinesterase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.797
	SRR3591706	second leaf	2.047
	SRR3591707	mature leaf	0.161
	SRR3591708	Shoot apex	7.752
	SRR3591709	Stem	6.258
	SRR3591710	White floral bud	2.701
	SRR3591711	White flower	1.541
	SRR3591712	Green floral bud	8.714
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	6.321
	SRR8316896	Juvenile bud stage	8.203
	SRR8316897	Juvenile bud stage	6.971
	SRR8316894	Third green stage	1.725
	SRR8316900	Third green stage	6.142
	SRR8316901	Third green stage	3.353
	SRR8316898	Complete white stage	2.855
	SRR8316899	Complete white stage	4.654
	SRR8316903	Complete white stage	4.924
	SRR8316902	Silver flowering stage	1.541
	SRR8316904	Silver flowering stage	1.301
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	9.796
	SRR6706287	Light intensity 50%	10.400
	SRR6706288	Light intensity 20%	15.708
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.493
	CNS0095593	Slightly white alabastrum(diploid) 2	2.295
	CNS0095594	Slightly white alabastrum(diploid) 3	5.681
	CNS0095595	Whole white alabastrum(diploid) 2	1.760
	CNS0095596	Whole white alabastrum(diploid) 3	1.812
	CNS0095597	Whole white alabastrum(diploid) 4	1.141
	CNS0095598	Silvery flower (diploied) 1	0.255
	CNS0095599	Silvery flower (diploied) 2	2.020
	CNS0095600	Silvery flower (diploied) 3	0.624
	CNS0095601	Golden flower (diploid) 1	1.200
	CNS0095602	Golden flower (diploid) 2	0.270
	CNS0095603	Golden flower (diploid) 3	0.205
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.164
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.752
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.365
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.007
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.854
	CNS0095609	Whole white alabastrum(tetraploid) 3	17.837
	CNS0095610	Silvery flower (tetraploid) 1	0.061
	CNS0095611	Silvery flower (tetraploid) 2	0.078
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.032
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	4.711
	CRR073298	Stem 2	4.874
	CRR073299	Stem 3	4.650
	CRR073300	Leaf 1	3.422
	CRR073301	Leaf 2	1.971
	CRR073302	Leaf 3	2.353
	CRR073303	Juvenile bud 1	1.729
	CRR073304	Juvenile bud 2	2.373
	CRR073305	Juvenile bud 3	2.390
	CRR073306	Third green 1	0.037
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.032
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.068
	CRR073316	Gold flowering 2	0.781
	CRR073317	Gold flowering 3	0.037
	CRR073318	Tawny withering 1	13.976
	CRR073319	Tawny withering 2	12.342
	CRR073320	Tawny withering 3	13.206