Gene detail

Detail information of GWHGAAZE025718

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010656252.1	0	PREDICTED: probable serine/threonine-protein kinase vps15 isoform X1 [Vitis vinifera]
COG	YP_007142396.1	1E-10	WD40 repeat-containing protein
Swissprot	tr\|O24456\|GBLPA_ARATH	0.0000003	Guanine nucleotide-binding protein subunit beta-like protein A
trEMBL	tr\|F6HGX9\|F6HGX9_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB51477.1}
TAIR10	AT4G29380.1	0	protein kinase family protein / WD-40 repeat family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	66683632	66694864	-
GWHAAZE00000007	mRNA	66683632	66694864	-
GWHAAZE00000007	exon	66683632	66683808	-
GWHAAZE00000007	exon	66685104	66685203	-
GWHAAZE00000007	exon	66685296	66685543	-
GWHAAZE00000007	exon	66686175	66686603	-
GWHAAZE00000007	exon	66686911	66689442	-
GWHAAZE00000007	exon	66689793	66689969	-
GWHAAZE00000007	exon	66690675	66690780	-
GWHAAZE00000007	exon	66691404	66691483	-
GWHAAZE00000007	exon	66692176	66692238	-
GWHAAZE00000007	exon	66693310	66693470	-
GWHAAZE00000007	exon	66693618	66693663	-
GWHAAZE00000007	exon	66693754	66693876	-
GWHAAZE00000007	exon	66694589	66694864	-
GWHAAZE00000007	CDS	66694589	66694864	-
GWHAAZE00000007	CDS	66693754	66693876	-
GWHAAZE00000007	CDS	66693618	66693663	-
GWHAAZE00000007	CDS	66693310	66693470	-
GWHAAZE00000007	CDS	66692176	66692238	-
GWHAAZE00000007	CDS	66691404	66691483	-
GWHAAZE00000007	CDS	66690675	66690780	-
GWHAAZE00000007	CDS	66689793	66689969	-
GWHAAZE00000007	CDS	66686911	66689442	-
GWHAAZE00000007	CDS	66686175	66686603	-
GWHAAZE00000007	CDS	66685296	66685543	-
GWHAAZE00000007	CDS	66685104	66685203	-
GWHAAZE00000007	CDS	66683632	66683808	-

Transcript Sequence
>GWHTAAZE025752 ATGGGGAACAAGATCGCTCGAACAACGCAAGCATCGGCGACGGAGTACTACCTCCACGACTTGCCGTCTTCGTACAATTTGGTGCTGAAGGAGGTCCTTGGCCGTGGCCGATTCTTGAAATCCATACTCTGTAAGCACGACGAAGGCCTCGTCCTCGTCAAGGTCTATTTCAAGCGAGGTGCCGACTCTATCGATCTCCGTGAATACGAGCGTCGCCTCTCTCAAATCCGTGAGATCTTCAGTCGCCTTGATCAACCTCACGTTTGGCCATTCCAGTTTTGGCTTGAAACAGATAAAGCTGCTTATCTGTTAAGGCAATACTTCTTCAATAACCTTCATGATCGGTTGAGTACACGCCCTTTCCTCAGTCTCGTGGAGAAGAAATGGTTGGCATTCCAGTTGCTTTATGCGGTGAAACAGTGCCATGAAAATGGAGTTTGTCATGGTGATATCAAGTGTGAGAATGTGTTGGTCACTTCCTGGAATTGGCTTTACCTTGCTGACTTTGCATCATTCAAACCTACTTATATTCCACACGATGACCCATCTGATTTCTCATTTTTCTTCGACACCGGAGGAAGAAGGCGCTGTTATCTTGCACCTGAGATGGTCGCTCTGTTAGCTTTGAGGAATAGAAGACAAGGTAGGGAGGAAACCCATTCTTTCGATAGATTTTATGAGCATGGAGGTGAGATTCAAATTGCGCAAGATGCACCTTTAAGGCCATCCATGGACATCTTTGCTGTAGGGTGTGTAATTGCGGAGCTTTTCCTTGAGGGTCAGCCACTGTTTGAACTGTCCCAGTTACTTGCTTATCGCAGAGGGCAATATGATCCTAGCCAACATCTGGAGAAGATCCCAGATTCAGGTATCCGTATGATGATCCTTCATATGATCCAGCTCGGTCCAGACGATCGATTTTCTGCTGATAGTTACCTGCAGACCTATGCAGGTGTTGTGTTTCCATGTTACTTCTCACCGTTTCTGCACAATTTCTATTCCCTGTTGAACCTGCGTAATCCTGATTCAAGAGTTCTAATATGCCAGCTTTCTTTCCAAGAGATACTTAAACAAATGATGAGCAATAGTGCGGGAGAAGAGACCCTTGTTGGACTGGATTTACCTTCCAATTCCCTAAATTGTCAACTATCACAACATATTGATGCAAACAAAAGTTCATGTTTATCAAGGGATTCCTCGAGAAAAAAAGAAGATACAAACAAGGGTTCAATTCATGGTCCGATCGAACTCCCTGGTGACATCAGCACCTTACTTAGGGATGTAAAACAAAATAATCGTTATTCTGATGCAAAGCCAATGCTGCAGAACATTGCCAGTCCTGCATATTCCAAAAATCAAGAACAACAAGGTGGGGCTGAATCTCCAGGAAAGTTACTTCAGTCTATCTCTAACGTATTCAAGAGAAATCACCACCCTTTTCTGAAAAAGATCACGATGAAAGATTTGAACTCGTTGATGTCTGATTACGACAACCAATCAGATACATTTGGGATGCCGTTTTTACCCTTACCTCAAGATAGTATGAGTTGTGAAGGAATGGTGTTGATCGCCTCTCTTCTCTGTGCCTGCATACGCAATATCAAATTGCCTCATTTGAGGAGAGGAGCCGTACTATTACTCAAATCATGTTCCTTATATATCGACGATGAAGATCGTTTACAACGCGTACTTCCGTATGTTATTGCGATGCTCTCCGATCCAGCAGCAATTGTTCGTTGTGCTGCATTAGAGACTTTGTGTGACATTTTACCTTTAGTCCGAGACTTCCCTCCTAGTGATGCTAAAATTTTCCCAGAATATATTCTTCCTATGCTTTCAATGCTTCCTGACGATCCAGAGGAAAGTGTGAGGATATGTTATGCCAGCAATATATCTAAGTTAGCCCTTACCGCTTATGGGTTTTTAATTCATTCAATAAGCTTGAGCGAGGCCGGGGTTCTAGTTGAGGAACCCAAAAGGCTAAAGAATCAAAATAGTGATTTGCAGCTTGCACAGTTGAGAAAGTCCATAGCCGAGGTTATTCAAGAACTCGTAATGGGTCCTAAGCAAACCCCAAATATTAGAAGAGCGCTTTTGCAAGATATCGGTAACCTCTGCTGGTTCTTTGGCCAGAGACAGAGCAATGACTTTTTATTGCCCATCCTCCCTGCATTTTTGAATGATCGAGATGAGCAGCTACGAGCGGTGTTCTACGGTCAGATTGTTTACGTCTGCTTCTTTGTTGGCCAAAGAAGCGTTGAAGAGTATCTGTTACCTTACATTGAACAGGCATTAGGTGATTCAACCGAGGGTGTTATTGCGAACGCATTAGATTGCTTGGCGATTCTGTGCAAAAGTGGTTTTTTACGGAAAAGGGTACTTTTGGAGATGATAGAGCATGCTTTTCCTTTGTTATGTTTCCCTAGTCAATGGGTAAGGAGGTCAGTGGTGGCTTTCATTGCCGCTAGCAGTGAGAGCTTAGGGGCTGTCGATTCTTATGTTTTTTTGGTCCCAGTTATACGGCCTTTTCTCCGTAGACAACCATCATCTTTAGCGTCCGAAACCGCCCTTCTTTCGTGTTTAAAACCCCCGGTCTCGAGGCAGTTATTTTACCAAGTCTTGGAAAATTCAAGGAGTTCGGATATGTTGGAAAGACAGAGAAAGATATGGTACAATTCATCGGCACAATCCAAGCAATGGGAAACCCTAGATTTATTCCATAAAGGACCCGGAGATTTGGATTCTATGCATATGTTGGATCTAAGTGAAAACCACAGTGAGTCTAAGTTGAAAACCATGGGAAGCTTTATGCCTAATGAGCCCCTTTGCACAGAAAAGTTGCAATTCTCTGGTTTTATGTCTCCTCAGATGAGTGTAGCAAACAGCATCAGTTGTGATAAATCGTCAGAAGGAATACCGTTGTACTACTTCAAATACGATAACAATCGAACGTCAGGGATTCCTTCAGCATCCGATATGTCATTACCGTTGAACTCTTTAGGTTTAGATTCATCGTCCATGCCTTGGATGGATCCAGTAAACAAATCCTTTAGCTTGGCTAGCTCGGTTCCAGCTCCTAAGCTGGTCTCAGGCTCAATAAGCATAGGTAATAGTCCCCCACAGCTTCACAGAGTTGTACACGAGGTTGAAGAGAGAGAAACAGATCAAGTACCCTTTATCAATAGCACAATGAAAGGTAGTTCTATTAAATCAGAAGATACCTCGTTAACTGAGCCAATGGGATTACCATCCTTTGGGTGGCGGCCTCGGGGTGTTTTGGTTGCCCACCTGCAAGAGCACCAGTCAGCCGTTAATGACATTGCTGTTTCGACGGACCACTCATTTTTTGTGAGTGCATCTGATGATTCGACTGTTAAGGTATGGGATTCAAAAAAGTTGGAGAAGGACATCTCGTTTAGGTCGAGGCTAACTTATTCTCTAGAGGGAAGCCGAGCACTCTGTGTTGCGATGCTACAAGGCTCCACACAAGTTATCGTTGGAGCTTCAGATGGAACAATACACACGTTCTCAGTTGATTCCATCTCGAAAGGACTCGGCAATGTTAATCGTGTTGGAGAAGCTGCAATAGTCACCCTGTTGAACTACTCTGCTGCAGATAGTAGTGCCTCTCAAATGGTTCTTTACAGCACCCAAAATTGCGGGCTCCATTTATGGGATACAAGAACAAGTTCAAATGTGTGGAATTCAAAAGTTATTCCTGAAGAGGGCTATGTATCTTCTCTTGTAACAAGCCCTTGTGGGAATTGGTTTGTGTCCGGGTCCTCGAGGGGTGTGATTACTCTTTGGGATTTAAGGTTTTGTATACCAGTCAACTCATGGCAGAATTCTCTTGCAAGCCCTATTGAAAAGATTTGTCTTTTTGTTCCCCCGATGAATACCTCTGTATCTGCTACAGCCAGGCCACTTGTATATATTGCAGCGGGCTGTAATGAAGTTTCTCTCTGGAATGCAGAGAATGGAAGCTGTCACCAGGTATTGAGAATGTCAAATAGTGACAGTGATAATGAAACCTCTGAACTACCTTGGGCCTTGGCCAGACCATCCAGTAAGGTAAATTCTAAAATCGATATGCGAAGGAATGCCAAATCAAAGTACAGAGTAGATGAGCTGCAGGACCCCCCTCCTCGAATTCCAGGTGTACGTTCACTGCTCCCTCTACCTGGAGGAGACTTGTTAACTGGGGGTACTGACTTAAAGATACGTCGGTGGGACCATTACAGCCCGGACCGAAGTTATTGTATTTGTGGGCCGTCTTTAGAGGGAGTTGGAAATGATGATTTTTACGAAACAAAATCTAATTTTGGTGTGCAAGTTGTGCAGGAGGCAAAAAGACGACCTCTGGCAACCAGGTTGACCGGAAAGGCAGTTCTTCAAGCAGCTGCCATTGATCCTGCAGGTTGTCATCGTGATTCTATCCTTTCTTTGGCTTCTGTCAAATTGAACCAGAGACTTATTATATCAAGCAGTAGAGATGGGGCCATCAAGGTTTGGAAGTAA

Network for GWHGAAZE025718

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	29	314	4.80E-18
PF02985.23	HEAT	563	591	0.00018
PF00400.33	WD40	1093	1129	2.60E-06

Protein Sequence

>GWHPAAZE025736
MGNKIARTTQASATEYYLHDLPSSYNLVLKEVLGRGRFLKSILCKHDEGLVLVKVYFKRGADSIDLREYERRLSQIREIFSRLDQPHVWPFQFWLETDKAAYLLRQYFFNNLHDRLSTRPFLSLVEKKWLAFQLLYAVKQCHENGVCHGDIKCENVLVTSWNWLYLADFASFKPTYIPHDDPSDFSFFFDTGGRRRCYLAPEMVALLALRNRRQGREETHSFDRFYEHGGEIQIAQDAPLRPSMDIFAVGCVIAELFLEGQPLFELSQLLAYRRGQYDPSQHLEKIPDSGIRMMILHMIQLGPDDRFSADSYLQTYAGVVFPCYFSPFLHNFYSLLNLRNPDSRVLICQLSFQEILKQMMSNSAGEETLVGLDLPSNSLNCQLSQHIDANKSSCLSRDSSRKKEDTNKGSIHGPIELPGDISTLLRDVKQNNRYSDAKPMLQNIASPAYSKNQEQQGGAESPGKLLQSISNVFKRNHHPFLKKITMKDLNSLMSDYDNQSDTFGMPFLPLPQDSMSCEGMVLIASLLCACIRNIKLPHLRRGAVLLLKSCSLYIDDEDRLQRVLPYVIAMLSDPAAIVRCAALETLCDILPLVRDFPPSDAKIFPEYILPMLSMLPDDPEESVRICYASNISKLALTAYGFLIHSISLSEAGVLVEEPKRLKNQNSDLQLAQLRKSIAEVIQELVMGPKQTPNIRRALLQDIGNLCWFFGQRQSNDFLLPILPAFLNDRDEQLRAVFYGQIVYVCFFVGQRSVEEYLLPYIEQALGDSTEGVIANALDCLAILCKSGFLRKRVLLEMIEHAFPLLCFPSQWVRRSVVAFIAASSESLGAVDSYVFLVPVIRPFLRRQPSSLASETALLSCLKPPVSRQLFYQVLENSRSSDMLERQRKIWYNSSAQSKQWETLDLFHKGPGDLDSMHMLDLSENHSESKLKTMGSFMPNEPLCTEKLQFSGFMSPQMSVANSISCDKSSEGIPLYYFKYDNNRTSGIPSASDMSLPLNSLGLDSSSMPWMDPVNKSFSLASSVPAPKLVSGSISIGNSPPQLHRVVHEVEERETDQVPFINSTMKGSSIKSEDTSLTEPMGLPSFGWRPRGVLVAHLQEHQSAVNDIAVSTDHSFFVSASDDSTVKVWDSKKLEKDISFRSRLTYSLEGSRALCVAMLQGSTQVIVGASDGTIHTFSVDSISKGLGNVNRVGEAAIVTLLNYSAADSSASQMVLYSTQNCGLHLWDTRTSSNVWNSKVIPEEGYVSSLVTSPCGNWFVSGSSRGVITLWDLRFCIPVNSWQNSLASPIEKICLFVPPMNTSVSATARPLVYIAAGCNEVSLWNAENGSCHQVLRMSNSDSDNETSELPWALARPSSKVNSKIDMRRNAKSKYRVDELQDPPPRIPGVRSLLPLPGGDLLTGGTDLKIRRWDHYSPDRSYCICGPSLEGVGNDDFYETKSNFGVQVVQEAKRRPLATRLTGKAVLQAAAIDPAGCHRDSILSLASVKLNQRLIISSSRDGAIKVWK

Gene family

Gene family	subfamily
Protein Kinases Family	CMGC_Pl-Tthe
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
K08333	PIK3R4, VPS15	Apelin signaling pathway	map04371
		Autophagy - animal	map04140
		Autophagy - yeast	map04138
		Autophagy - other	map04136

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005515	molecular_function	protein binding
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.425
	SRR3591706	second leaf	6.767
	SRR3591707	mature leaf	9.447
	SRR3591708	Shoot apex	8.867
	SRR3591709	Stem	12.123
	SRR3591710	White floral bud	11.350
	SRR3591711	White flower	13.327
	SRR3591712	Green floral bud	8.601
	SRR3591713	Yellow flower	10.812
SRP173429	SRR8316895	Juvenile bud stage	5.488
	SRR8316896	Juvenile bud stage	8.029
	SRR8316897	Juvenile bud stage	3.116
	SRR8316894	Third green stage	3.636
	SRR8316900	Third green stage	6.266
	SRR8316901	Third green stage	5.341
	SRR8316898	Complete white stage	2.783
	SRR8316899	Complete white stage	7.940
	SRR8316903	Complete white stage	8.895
	SRR8316902	Silver flowering stage	4.163
	SRR8316904	Silver flowering stage	7.788
	SRR8316905	Silver flowering stage	3.119
	SRR8316906	Gold flowering stage	11.833
	SRR8316907	Gold flowering stage	10.551
	SRR8316908	Gold flowering stage	10.492
SRP132670	SRR6706286	Control	7.187
	SRR6706287	Light intensity 50%	7.663
	SRR6706288	Light intensity 20%	7.130
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.391
	CNS0095593	Slightly white alabastrum(diploid) 2	4.248
	CNS0095594	Slightly white alabastrum(diploid) 3	3.860
	CNS0095595	Whole white alabastrum(diploid) 2	3.540
	CNS0095596	Whole white alabastrum(diploid) 3	2.244
	CNS0095597	Whole white alabastrum(diploid) 4	3.452
	CNS0095598	Silvery flower (diploied) 1	7.885
	CNS0095599	Silvery flower (diploied) 2	5.045
	CNS0095600	Silvery flower (diploied) 3	14.415
	CNS0095601	Golden flower (diploid) 1	7.819
	CNS0095602	Golden flower (diploid) 2	16.305
	CNS0095603	Golden flower (diploid) 3	15.745
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.287
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.821
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.157
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.016
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.452
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.336
	CNS0095610	Silvery flower (tetraploid) 1	12.455
	CNS0095611	Silvery flower (tetraploid) 2	15.980
	CNS0095612	Silvery flower (tetraploid) 3	11.183
	CNS0095613	Golden flower (tetraploid) 1	7.481
	CNS0095614	Golden flower (tetraploid) 2	11.679
	CNS0095615	Golden flower (tetraploid) 3	18.081
CRA001975	CRR073297	Stem 1	11.000
	CRR073298	Stem 2	9.904
	CRR073299	Stem 3	8.124
	CRR073300	Leaf 1	8.820
	CRR073301	Leaf 2	7.200
	CRR073302	Leaf 3	6.640
	CRR073303	Juvenile bud 1	5.870
	CRR073304	Juvenile bud 2	4.399
	CRR073305	Juvenile bud 3	9.175
	CRR073306	Third green 1	3.302
	CRR073307	Third green 2	2.010
	CRR073308	Third green 3	3.777
	CRR073309	Second white 1	2.286
	CRR073310	Second white 2	4.230
	CRR073311	Second white 3	4.965
	CRR073312	Silver flowering 1	4.362
	CRR073313	Silver flowering 2	3.680
	CRR073314	Silver flowering 3	5.014
	CRR073315	Gold flowering 1	4.459
	CRR073316	Gold flowering 2	9.573
	CRR073317	Gold flowering 3	4.950
	CRR073318	Tawny withering 1	6.190
	CRR073319	Tawny withering 2	4.786
	CRR073320	Tawny withering 3	5.118