Gene detail

Detail information of GWHGAAZE025731

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002283274.1	0	PREDICTED: ATP-dependent 6-phosphofructokinase 3-like [Vitis vinifera]
COG	YP_003804939.1	2E-123	phosphofructokinase
Swissprot	tr\|Q94AA4\|PFKA3_ARATH	0	ATP-dependent 6-phosphofructokinase 3 {ECO:0000255\|HAMAP-Rule:MF_03186}
trEMBL	tr\|D7TBD7\|D7TBD7_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI27972.3}
TAIR10	AT4G26270.1	0	phosphofructokinase 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	66891662	66900463	+
GWHAAZE00000007	mRNA	66891662	66900463	+
GWHAAZE00000007	exon	66891662	66891895	+
GWHAAZE00000007	exon	66894487	66894533	+
GWHAAZE00000007	exon	66894657	66894696	+
GWHAAZE00000007	exon	66895244	66895306	+
GWHAAZE00000007	exon	66895392	66895529	+
GWHAAZE00000007	exon	66897010	66897168	+
GWHAAZE00000007	exon	66897302	66897355	+
GWHAAZE00000007	exon	66897463	66897531	+
GWHAAZE00000007	exon	66897658	66897787	+
GWHAAZE00000007	exon	66898284	66898549	+
GWHAAZE00000007	exon	66899989	66900037	+
GWHAAZE00000007	exon	66900136	66900290	+
GWHAAZE00000007	exon	66900443	66900463	+
GWHAAZE00000007	CDS	66891662	66891895	+
GWHAAZE00000007	CDS	66894487	66894533	+
GWHAAZE00000007	CDS	66894657	66894696	+
GWHAAZE00000007	CDS	66895244	66895306	+
GWHAAZE00000007	CDS	66895392	66895529	+
GWHAAZE00000007	CDS	66897010	66897168	+
GWHAAZE00000007	CDS	66897302	66897355	+
GWHAAZE00000007	CDS	66897463	66897531	+
GWHAAZE00000007	CDS	66897658	66897787	+
GWHAAZE00000007	CDS	66898284	66898549	+
GWHAAZE00000007	CDS	66899989	66900037	+
GWHAAZE00000007	CDS	66900136	66900290	+
GWHAAZE00000007	CDS	66900443	66900463	+

Transcript Sequence
>GWHTAAZE025765 ATGGAGCCGGTGCATAGTAATTCTTCAATTTCTGCTCTGAAATTGCGCGGACTCGATCGTTTGAATTCGAATTCCAAGGCGGTTGCTCCTGGTTCACGGAACGGGTTGGTGAAGCTCTCTTTGCGAGCTGCTATGTCGCCGTCCAGCGACTCTCCGGCGAAGGTTGTCACCGGAAATGCTGGTTACGTACTCGAAGATGTTCCTCATTTGTCCGATTACATCCCTGATCTTCCTACCTACTCCAACCCATTGCAAGACAATCCTGCATATTCTGTTGTTAAGCAGTATTTCGTTAATGACGATGACACGGTTCAACAAAAGATTGTTGTTCACAAGGATAGTCCAAGAGGGGTACATTTTCGACGTGCCGGACCCCGTCAAAGGGTATACTTTGAGCCAGATGATGTTCGCGCGTGCATTGTGACGTGTGGGGGCTTATGCCCTGGCGTCAATACTGTAATTAGAGAAATAGTATGTGGATTGTACCATATGTATGGTGTATCAAGAGTACTAGGGATAGAGGGAGGATACAAAGGTTTCTATTCTCGAAATACAATCCCTTTAACACCCAAAGTTGTGAACGATATCCATAAACGTGGTGGAACCATACTTGGAACATCAAGAGGTGGCCATGATACCACAAAGATAGTCAACTGCATCCAGGACAGGGGAGTTAATCAGGTTTATATAATTGGGGGAGATGGAACCCAGAAAGGGGCATCTGTGATTTATGAGGAAATTAGGAGGCGTGGTCTTAAAGTTGCAGTTGCTGGAATACCCAAAACTATTGATAACGATATACCGGTTATTGACAAGTCATTCGGGTTTGATACCGCTGTTGAGGAAGCACAACGTGCTATTAATGCAGCACATGTTGAAGCTGATAGTTTTGAGAATTGTATTGGTTTTGTGAAGTTAATGGGTCGTTACAGTGGTTTTATTGCAATGTATGCTACTCTTGCAAGCCGAGACGCTGACTGTTGCTTGATTCCAGAGTCACCCTTTTACCTTGAAGGGCCTGGTGGGCTTTTTGAATTTGTAGAGAAACGACTAAAAGACAATGGACACATGGTTATTGTTATGGTTGAAGGTGCAGGGCAGGAACTCCTGTCGGAGAGTTTGCGCTCCACCGATCAGCAGGATGCTTCTGGTAATAAGCTTCTACCAGATGTTGGATTTTGGTTATCTCAGAAGATCAAGGATCATTTCTCAAGCCAAAAGAAGATGAAAATCAACCTCAAATATATAGATCCTACATATATGATCCGAGCTGTTCCTAGCAATGCATCCGATAATGTGTACTGCACACTTCTTGCTCAAAGTGCTGTTCATGGAGCAATGGCGGGCTACACGGGCTTTACTGTTGGGTCAGTCAATGGCAGAAATGCTTACATACCCTTCTACGCTAAGAGAAAGCGGGTGTGA

Network for GWHGAAZE025731

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00365.21	PFK	139	444	1.10E-62

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00850	pfkA, PFK	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Biosynthesis of amino acids	map01230
		Glycolysis / Gluconeogenesis	map00010
		Pentose phosphate pathway	map00030
		Fructose and mannose metabolism	map00051
		Galactose metabolism	map00052
		Methane metabolism	map00680
		RNA degradation	map03018
		HIF-1 signaling pathway	map04066
		AMPK signaling pathway	map04152
		Glucagon signaling pathway	map04922
		Thyroid hormone signaling pathway	map04919

Gene Ontology

GO term	Ontology	Name
GO:0006096	biological_process	glycolytic process
GO:0006002	biological_process	fructose 6-phosphate metabolic process
GO:0003872	molecular_function	6-phosphofructokinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.036
	SRR3591706	second leaf	3.057
	SRR3591707	mature leaf	11.474
	SRR3591708	Shoot apex	1.413
	SRR3591709	Stem	2.823
	SRR3591710	White floral bud	1.191
	SRR3591711	White flower	8.264
	SRR3591712	Green floral bud	1.224
	SRR3591713	Yellow flower	16.737
SRP173429	SRR8316895	Juvenile bud stage	2.232
	SRR8316896	Juvenile bud stage	6.052
	SRR8316897	Juvenile bud stage	1.787
	SRR8316894	Third green stage	2.944
	SRR8316900	Third green stage	1.044
	SRR8316901	Third green stage	1.848
	SRR8316898	Complete white stage	0.375
	SRR8316899	Complete white stage	2.758
	SRR8316903	Complete white stage	0.478
	SRR8316902	Silver flowering stage	1.757
	SRR8316904	Silver flowering stage	1.888
	SRR8316905	Silver flowering stage	0.867
	SRR8316906	Gold flowering stage	4.025
	SRR8316907	Gold flowering stage	4.085
	SRR8316908	Gold flowering stage	6.034
SRP132670	SRR6706286	Control	4.570
	SRR6706287	Light intensity 50%	2.900
	SRR6706288	Light intensity 20%	2.364
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.425
	CNS0095593	Slightly white alabastrum(diploid) 2	2.942
	CNS0095594	Slightly white alabastrum(diploid) 3	4.821
	CNS0095595	Whole white alabastrum(diploid) 2	1.387
	CNS0095596	Whole white alabastrum(diploid) 3	0.606
	CNS0095597	Whole white alabastrum(diploid) 4	2.113
	CNS0095598	Silvery flower (diploied) 1	1.153
	CNS0095599	Silvery flower (diploied) 2	2.676
	CNS0095600	Silvery flower (diploied) 3	1.768
	CNS0095601	Golden flower (diploid) 1	4.039
	CNS0095602	Golden flower (diploid) 2	4.591
	CNS0095603	Golden flower (diploid) 3	4.241
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.289
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.601
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.905
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.247
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.449
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.992
	CNS0095610	Silvery flower (tetraploid) 1	8.009
	CNS0095611	Silvery flower (tetraploid) 2	5.227
	CNS0095612	Silvery flower (tetraploid) 3	4.346
	CNS0095613	Golden flower (tetraploid) 1	3.930
	CNS0095614	Golden flower (tetraploid) 2	5.482
	CNS0095615	Golden flower (tetraploid) 3	3.811
CRA001975	CRR073297	Stem 1	4.008
	CRR073298	Stem 2	9.277
	CRR073299	Stem 3	3.890
	CRR073300	Leaf 1	0.812
	CRR073301	Leaf 2	1.079
	CRR073302	Leaf 3	0.345
	CRR073303	Juvenile bud 1	0.331
	CRR073304	Juvenile bud 2	0.505
	CRR073305	Juvenile bud 3	0.367
	CRR073306	Third green 1	0.414
	CRR073307	Third green 2	0.218
	CRR073308	Third green 3	0.091
	CRR073309	Second white 1	0.790
	CRR073310	Second white 2	1.407
	CRR073311	Second white 3	0.613
	CRR073312	Silver flowering 1	1.355
	CRR073313	Silver flowering 2	1.371
	CRR073314	Silver flowering 3	1.390
	CRR073315	Gold flowering 1	5.072
	CRR073316	Gold flowering 2	5.760
	CRR073317	Gold flowering 3	2.786
	CRR073318	Tawny withering 1	7.220
	CRR073319	Tawny withering 2	6.532
	CRR073320	Tawny withering 3	2.073