Gene detail

Detail information of GWHGAAZE025740

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_003633115.1	0	PREDICTED: asparagine--tRNA ligase, cytoplasmic 1 [Vitis vinifera]
COG	YP_004509817.1	8E-153	asparaginyl-tRNA synthetase
Swissprot	tr\|Q9SW96\|SYNC1_ARATH	0	Asparagine--tRNA ligase, cytoplasmic 1
trEMBL	tr\|F6HGX0\|F6HGX0_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB51468.1}
TAIR10	AT5G56680.1	0	Class II aminoacyl-tRNA and biotin synthetases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	67078146	67084668	+
GWHAAZE00000007	mRNA	67078146	67084668	+
GWHAAZE00000007	exon	67078146	67078631	+
GWHAAZE00000007	exon	67081695	67082285	+
GWHAAZE00000007	exon	67083158	67083411	+
GWHAAZE00000007	exon	67083675	67083795	+
GWHAAZE00000007	exon	67084061	67084119	+
GWHAAZE00000007	exon	67084485	67084668	+
GWHAAZE00000007	CDS	67078146	67078631	+
GWHAAZE00000007	CDS	67081695	67082285	+
GWHAAZE00000007	CDS	67083158	67083411	+
GWHAAZE00000007	CDS	67083675	67083795	+
GWHAAZE00000007	CDS	67084061	67084119	+
GWHAAZE00000007	CDS	67084485	67084668	+

Transcript Sequence
>GWHTAAZE025774 ATGGCCGACCAATCCTCACCGCCGGTCGATCAACTCTCCGCCGTAACCTTAACCTCCACCGCAGTACCAGAGTCCCAATTCTCCCAGCGAGTCCCAATCCGGTCCATCCTCAACCGCTCCGACGGCGGCGCCGGACTCGCAGGAAACACAGCGAAGGTTGGAGGCTGGGTAAAGACGGGGAGAAAGCAGGACAAAGGTTCGTTCGCCTTCCTCGAGGTGAATGATGGATCGGGTCCTGCGAATCTCCAGGTCATCGTCGACGCCGGGATCTGGAATCTCGGGCAGTTGGTTCAGACCGGCACGTGCGTGCACGTGGAGGGAGTTTTACAGGTCCCTCCCGAGGGGAAAACGCAAAAGATTGAACTTAGGGCAAGTAAGGTTATTGATGTTGGTACTGTGGACCCGGCTAAGTATCCCTTGCCTAAAACTAAGCTAACCCTAGAGTTTCTCAGAGATTTCGTTCATCTTCGTCCCAAAACCAATACGATTTCTTCAATTGCTCGGATCCGTAATCAGCTGGCTTTTGCTACCCACACATTCTTCCAAGAACACGGGTTTCTCTATGTGCACACTCCGATCATCACCACTAGTGATTGTGAGGGTGCCGGTGAGATGTTTCAAGTCACAACGTTGATTAACGATGCGGAAAAATTGGAGAAAGAACTGATTAAGAATCCTCCTCCATCAGAAGCCGAGTTGGAAGCAGCTAAGCTTATTGTCAAGGAAAAAGGAGAGATTGTTGGGCAGTTAAAATCTGCTAAAGCAAGTAAACAGGAAATTACTGCTGCTGTTTCTGAGCTTAACAAGGCTAAAGAAGATCTCTCGAGGCTTGAAGAGAGGTCTAAGCTTAAGCCCGGTATTCCTCAAAAAGATGGGAAGATTGATTATGCCCAAGATTTCTTTGCTCGTCAAGCTTTTTTGACTGTTTCGGGTCAACTGCAAGTTGAAACATATGCTTGTGCACTTAGTAGTGTTTATACTTTTGGGCCGACTTTTCGAGCTGAACATTCTCACACCTCAAGGCATCTTGCCGAATTCTGGATGGTGGAACCTGAGATAGCATTTGCTGATATTCAGGACGATATGAACTGTGCAGAGGCATTTGTCAAATTCTTGTGCAAGTGGTTACTGGAGAAGTGCCTCGATGATATGAAATTTATGGTTGAGAAATTCGATAAAAGTGCCATTGATCGACTAAAAATGGTTTCTTCAAGCGACTTTGTCCGTATTTCTTACACGGAAGCTGTGGCTATTCTTGAGGAGGCTTCTAAAGAAAGGACATTTGAGAATAAAGTGGAATGGGGGATTGATTTAGCATCTGAACATGAAAGATACTTGACCGAGGTGAAATTTAAGTCACCTGTAATTGTGTATAATTATCCGAAAGGGATCAAAGCATTCTATATGAAGGTCAATCCTGACAACAAGACAGTTGCAGCTATGGATGTACTCGTTGGAGAATTAATTGGAGGGAGCCAGAGAGAAGAACGCTACGAGGTCATCAAAGAAAGAATACTGGAGATGGGTCTGCCTCTGGAGCCTTACGAATGGTACCTTGACCTGAGGCGCTATGGGACTGTAAAACATAGCGGTTTTGGTTTAGGGTTCGAACGAATGCTTCTTTTTGCTACCGGGATGGACAACATCAGAGATGTTATTCCTTTCCCCAGATACCCTGGCAGAGCTGATCTTTGA

Network for GWHGAAZE025740

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01336.26	tRNA_anti-codon	52	128	1.70E-09
PF00152.21	tRNA-synt_2	148	211	1.90E-12
PF00152.21	tRNA-synt_2	298	557	7.10E-61

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01893	NARS, asnS	Aminoacyl-tRNA biosynthesis	map00970

Gene Ontology

GO term	Ontology	Name
GO:0006421	biological_process	asparaginyl-tRNA aminoacylation
GO:0006418	biological_process	tRNA aminoacylation for protein translation
GO:0000166	molecular_function	nucleotide binding
GO:0004816	molecular_function	asparagine-tRNA ligase activity
GO:0005524	molecular_function	ATP binding
GO:0004812	molecular_function	aminoacyl-tRNA ligase activity
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	130.363
	SRR3591706	second leaf	84.552
	SRR3591707	mature leaf	69.015
	SRR3591708	Shoot apex	137.836
	SRR3591709	Stem	100.334
	SRR3591710	White floral bud	126.261
	SRR3591711	White flower	129.119
	SRR3591712	Green floral bud	173.606
	SRR3591713	Yellow flower	89.409
SRP173429	SRR8316895	Juvenile bud stage	83.775
	SRR8316896	Juvenile bud stage	112.766
	SRR8316897	Juvenile bud stage	57.481
	SRR8316894	Third green stage	45.261
	SRR8316900	Third green stage	149.199
	SRR8316901	Third green stage	139.094
	SRR8316898	Complete white stage	48.774
	SRR8316899	Complete white stage	194.645
	SRR8316903	Complete white stage	65.213
	SRR8316902	Silver flowering stage	31.438
	SRR8316904	Silver flowering stage	41.416
	SRR8316905	Silver flowering stage	20.939
	SRR8316906	Gold flowering stage	74.196
	SRR8316907	Gold flowering stage	62.278
	SRR8316908	Gold flowering stage	78.594
SRP132670	SRR6706286	Control	105.105
	SRR6706287	Light intensity 50%	110.109
	SRR6706288	Light intensity 20%	123.382
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	86.236
	CNS0095593	Slightly white alabastrum(diploid) 2	107.617
	CNS0095594	Slightly white alabastrum(diploid) 3	86.276
	CNS0095595	Whole white alabastrum(diploid) 2	88.651
	CNS0095596	Whole white alabastrum(diploid) 3	89.725
	CNS0095597	Whole white alabastrum(diploid) 4	77.911
	CNS0095598	Silvery flower (diploied) 1	65.135
	CNS0095599	Silvery flower (diploied) 2	63.500
	CNS0095600	Silvery flower (diploied) 3	100.857
	CNS0095601	Golden flower (diploid) 1	58.377
	CNS0095602	Golden flower (diploid) 2	94.123
	CNS0095603	Golden flower (diploid) 3	92.389
	CNS0095604	Slightly white alabastrum(tetraploid) 1	97.422
	CNS0095605	Slightly white alabastrum(tetraploid) 2	83.739
	CNS0095606	Slightly white alabastrum(tetraploid) 3	165.449
	CNS0095607	Whole white alabastrum(tetraploid) 1	53.965
	CNS0095608	Whole white alabastrum(tetraploid) 2	54.022
	CNS0095609	Whole white alabastrum(tetraploid) 3	144.573
	CNS0095610	Silvery flower (tetraploid) 1	106.063
	CNS0095611	Silvery flower (tetraploid) 2	116.801
	CNS0095612	Silvery flower (tetraploid) 3	78.572
	CNS0095613	Golden flower (tetraploid) 1	47.803
	CNS0095614	Golden flower (tetraploid) 2	91.354
	CNS0095615	Golden flower (tetraploid) 3	52.439
CRA001975	CRR073297	Stem 1	129.506
	CRR073298	Stem 2	127.362
	CRR073299	Stem 3	148.248
	CRR073300	Leaf 1	159.380
	CRR073301	Leaf 2	146.115
	CRR073302	Leaf 3	168.685
	CRR073303	Juvenile bud 1	178.034
	CRR073304	Juvenile bud 2	163.147
	CRR073305	Juvenile bud 3	176.187
	CRR073306	Third green 1	41.902
	CRR073307	Third green 2	36.293
	CRR073308	Third green 3	45.605
	CRR073309	Second white 1	48.819
	CRR073310	Second white 2	43.129
	CRR073311	Second white 3	35.047
	CRR073312	Silver flowering 1	29.879
	CRR073313	Silver flowering 2	36.697
	CRR073314	Silver flowering 3	29.158
	CRR073315	Gold flowering 1	68.384
	CRR073316	Gold flowering 2	96.949
	CRR073317	Gold flowering 3	94.595
	CRR073318	Tawny withering 1	132.109
	CRR073319	Tawny withering 2	136.364
	CRR073320	Tawny withering 3	157.851