Gene detail

Detail information of GWHGAAZE025745

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009771061.1	0	PREDICTED: histone acetyltransferase type B catalytic subunit isoform X1 [Nicotiana sylvestris]
Swissprot	tr\|Q9FJT8\|HATB_ARATH	0	Histone acetyltransferase type B catalytic subunit
trEMBL	tr\|V4TVQ9\|V4TVQ9_9ROSI	0	Histone acetyltransferase {ECO:0000256\|RuleBase:RU361211}
TAIR10	AT5G56740.1	2E-156	histone acetyltransferase of the GNAT family 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	67151525	67156956	-
GWHAAZE00000007	mRNA	67151525	67156956	-
GWHAAZE00000007	exon	67156881	67156956	-
GWHAAZE00000007	exon	67156736	67156777	-
GWHAAZE00000007	exon	67155974	67156083	-
GWHAAZE00000007	exon	67154270	67154338	-
GWHAAZE00000007	exon	67154083	67154121	-
GWHAAZE00000007	exon	67153919	67153995	-
GWHAAZE00000007	exon	67153664	67153763	-
GWHAAZE00000007	exon	67153132	67153207	-
GWHAAZE00000007	exon	67152861	67153024	-
GWHAAZE00000007	exon	67151525	67152166	-
GWHAAZE00000007	CDS	67156881	67156956	-
GWHAAZE00000007	CDS	67156736	67156777	-
GWHAAZE00000007	CDS	67155974	67156083	-
GWHAAZE00000007	CDS	67154270	67154338	-
GWHAAZE00000007	CDS	67154083	67154121	-
GWHAAZE00000007	CDS	67153919	67153995	-
GWHAAZE00000007	CDS	67153664	67153763	-
GWHAAZE00000007	CDS	67153132	67153207	-
GWHAAZE00000007	CDS	67152861	67153024	-
GWHAAZE00000007	CDS	67151525	67152166	-

Transcript Sequence
>GWHTAAZE025779 ATGGGGACGAAGCACCAATCATCAGACCCAACCTCTGACCCTAAGAAGCGAAGACGCGTCGGATTCGCCAAAATCGATGTTGGTGTAGAAGCTAACGAGTGCATTAAAATTTATCTAGTTTCTAGCAAAGAGGAAGTGGGTTCCCCAGATAGTTTCTGTCTTGAACCAGTTGACTTGAATCACTTTTTTGAAGAAGATGGGAAGATTTTCGGTTACCAAGGTTTGAAGATCACCATCTGGTTTAGCAGCATATCATTTCATGCATATGCTGATATTACTTTTGAGAGCAAATTTGATGGTGGCAAAGGGATCACAGATCTGAAACCTGCTCTTCAGAATATATTTGCTGATAATCTTGTTGAAAGCAAAGACAATTTCCTCCAAACTTTCTCTGCAGAGTCCAATTATGTTAAATCTATAATCTCAAATGGAGAGGTGTTGCTGCAGCAAGCCTCCAATGGACATAGCAATGATTCTAATAGCCAATTAAAAGCAGATGCTTCTGATGTGGAGGTTATTCGGATTGTTGGCACACCTGTTGGGCCTATTTACTGTCGATTGATACCTCTTGTCCTTCTTCTTGTAGATGGTAGCAATCCTATTGACATCACTGATCCAAGATGGGAGATCTATCTTTTAGTTCAGAAGAAAATTGATCAGCAAGCGGAGGGTAATCAACTTAAATTGCTTGGTTTTGCAGCTCTTTATCGTTTTTATCACTACCCAGAGAGCTTACGGTTGAGACTCAGTCAGATACTGGTCTTACCTCCTTACCAGAGAAACGGTTATGGCCGTACCCTCTTAGAAGTGCTCAACAAAGTTGCAGTGTCCGAAAATGTTTATGACCTAACAGTTGAAGAGCCATTGGACTCCTTACAACACGTGCGCACCTGCATCGATGTACAACGCTTGCTCACATTCGACCCAATCCAGCCCACCCTAAAGTCCGTCCTCTCACGTCTCAAGCAAGAAAACTTATCGAAGAAAACCGCCTTGTGTCGATTCGGTCCACCCTCAGATGCGATCGAGAATGTCAGAAAAAACTTGAAAATCAACAAGAAACAGTTTATACAATGCTGGGAGGTCCTCATCTATCTTGGCCTTGATCCAATTGATAAGTACATGGAGAATTATAGGATTATAATTTCGGATTCTGTAAAAGCTGATGTCATAGGTAAAGATTCGGGGGCCGCGAACAAGCGGATCATTGAAGTCTCGACCGAGTTCGACCAAGAAATGTCATTCGTCATGTTCAAATCGAAGAATGGTGAACCTAATAACATTGAGATGGATGAGAATCAAACTACTGTGGAGGAGCAGCTGAGGCAACTTGTTGATGAACGTATGAAGGAGATTGAACTAATTGCAGAGAAGGTATCACTGCATTGTTCATGA

Network for GWHGAAZE025745

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF10394.10	Hat1_N	29	152	3.00E-23
PF00583.26	Acetyltransf_1	228	290	4.20E-06

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	GNAT

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006325	biological_process	chromatin organization
GO:0008080	molecular_function	N-acetyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	26.316
	SRR3591706	second leaf	14.984
	SRR3591707	mature leaf	14.546
	SRR3591708	Shoot apex	57.280
	SRR3591709	Stem	20.798
	SRR3591710	White floral bud	25.589
	SRR3591711	White flower	31.021
	SRR3591712	Green floral bud	27.511
	SRR3591713	Yellow flower	25.380
SRP173429	SRR8316895	Juvenile bud stage	22.722
	SRR8316896	Juvenile bud stage	28.674
	SRR8316897	Juvenile bud stage	13.216
	SRR8316894	Third green stage	11.414
	SRR8316900	Third green stage	28.691
	SRR8316901	Third green stage	22.633
	SRR8316898	Complete white stage	8.735
	SRR8316899	Complete white stage	31.087
	SRR8316903	Complete white stage	14.846
	SRR8316902	Silver flowering stage	9.779
	SRR8316904	Silver flowering stage	14.431
	SRR8316905	Silver flowering stage	5.391
	SRR8316906	Gold flowering stage	15.725
	SRR8316907	Gold flowering stage	15.407
	SRR8316908	Gold flowering stage	17.651
SRP132670	SRR6706286	Control	27.229
	SRR6706287	Light intensity 50%	26.573
	SRR6706288	Light intensity 20%	28.588
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	17.816
	CNS0095593	Slightly white alabastrum(diploid) 2	20.736
	CNS0095594	Slightly white alabastrum(diploid) 3	16.097
	CNS0095595	Whole white alabastrum(diploid) 2	16.622
	CNS0095596	Whole white alabastrum(diploid) 3	13.018
	CNS0095597	Whole white alabastrum(diploid) 4	12.547
	CNS0095598	Silvery flower (diploied) 1	23.303
	CNS0095599	Silvery flower (diploied) 2	22.767
	CNS0095600	Silvery flower (diploied) 3	24.943
	CNS0095601	Golden flower (diploid) 1	23.812
	CNS0095602	Golden flower (diploid) 2	22.340
	CNS0095603	Golden flower (diploid) 3	21.397
	CNS0095604	Slightly white alabastrum(tetraploid) 1	20.284
	CNS0095605	Slightly white alabastrum(tetraploid) 2	16.651
	CNS0095606	Slightly white alabastrum(tetraploid) 3	31.563
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.564
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.813
	CNS0095609	Whole white alabastrum(tetraploid) 3	24.207
	CNS0095610	Silvery flower (tetraploid) 1	22.592
	CNS0095611	Silvery flower (tetraploid) 2	21.250
	CNS0095612	Silvery flower (tetraploid) 3	20.654
	CNS0095613	Golden flower (tetraploid) 1	13.061
	CNS0095614	Golden flower (tetraploid) 2	16.406
	CNS0095615	Golden flower (tetraploid) 3	13.391
CRA001975	CRR073297	Stem 1	33.308
	CRR073298	Stem 2	24.425
	CRR073299	Stem 3	30.268
	CRR073300	Leaf 1	23.987
	CRR073301	Leaf 2	21.272
	CRR073302	Leaf 3	18.241
	CRR073303	Juvenile bud 1	20.525
	CRR073304	Juvenile bud 2	14.314
	CRR073305	Juvenile bud 3	19.529
	CRR073306	Third green 1	7.222
	CRR073307	Third green 2	6.703
	CRR073308	Third green 3	6.683
	CRR073309	Second white 1	7.641
	CRR073310	Second white 2	10.906
	CRR073311	Second white 3	8.145
	CRR073312	Silver flowering 1	9.961
	CRR073313	Silver flowering 2	9.297
	CRR073314	Silver flowering 3	11.194
	CRR073315	Gold flowering 1	13.542
	CRR073316	Gold flowering 2	20.431
	CRR073317	Gold flowering 3	14.647
	CRR073318	Tawny withering 1	26.411
	CRR073319	Tawny withering 2	20.613
	CRR073320	Tawny withering 3	26.375