Detail information of GWHGAAZE025747


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010051622.17.5855E-103PREDICTED: uncharacterized protein LOC104440388 [Eucalyptus grandis]
trEMBLtr|A0A059CWJ5|A0A059CWJ5_EUCGR3E-103Uncharacterized protein {ECO:0000313|EMBL:KCW82531.1}
TAIR10AT4G29440.11E-72Regulator of Vps4 activity in the MVB pathway protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene6716305867165112-
GWHAAZE00000007mRNA6716305867165112-
GWHAAZE00000007exon6716305867163198-
GWHAAZE00000007exon6716336167163532-
GWHAAZE00000007exon6716422967164332-
GWHAAZE00000007exon6716471567164847-
GWHAAZE00000007exon6716508167165112-
GWHAAZE00000007CDS6716508167165112-
GWHAAZE00000007CDS6716471567164847-
GWHAAZE00000007CDS6716422967164332-
GWHAAZE00000007CDS6716336167163532-
GWHAAZE00000007CDS6716305867163198-
Transcript Sequence

Network for GWHGAAZE025747

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03398.15Ist1121761.20E-58
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K19476IST1 Endocytosis map04144

Gene Ontology

GO term OntologyName
GO:0015031biological_processprotein transport

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf42.587
SRR3591706second leaf9.801
SRR3591707mature leaf10.482
SRR3591708Shoot apex12.138
SRR3591709Stem31.697
SRR3591710White floral bud29.941
SRR3591711White flower32.685
SRR3591712Green floral bud25.619
SRR3591713Yellow flower21.839
SRP173429 SRR8316895Juvenile bud stage 32.715
SRR8316896Juvenile bud stage 20.629
SRR8316897Juvenile bud stage 26.700
SRR8316894Third green stage 10.012
SRR8316900Third green stage 22.269
SRR8316901Third green stage 25.486
SRR8316898Complete white stage 12.709
SRR8316899Complete white stage 42.056
SRR8316903Complete white stage 28.602
SRR8316902Silver flowering stage15.646
SRR8316904Silver flowering stage28.096
SRR8316905Silver flowering stage13.058
SRR8316906Gold flowering stage 50.474
SRR8316907Gold flowering stage 36.628
SRR8316908Gold flowering stage 40.600
SRP132670SRR6706286Control39.793
SRR6706287Light intensity 50%44.656
SRR6706288Light intensity 20%44.899
CNP0000432CNS0095592Slightly white alabastrum(diploid) 16.277
CNS0095593Slightly white alabastrum(diploid) 29.630
CNS0095594Slightly white alabastrum(diploid) 37.034
CNS0095595Whole white alabastrum(diploid) 27.238
CNS0095596Whole white alabastrum(diploid) 36.225
CNS0095597Whole white alabastrum(diploid) 49.386
CNS0095598Silvery flower (diploied) 122.512
CNS0095599Silvery flower (diploied) 225.138
CNS0095600Silvery flower (diploied) 355.707
CNS0095601Golden flower (diploid) 124.252
CNS0095602Golden flower (diploid) 270.596
CNS0095603Golden flower (diploid) 369.666
CNS0095604Slightly white alabastrum(tetraploid) 13.972
CNS0095605Slightly white alabastrum(tetraploid) 22.564
CNS0095606Slightly white alabastrum(tetraploid) 313.597
CNS0095607Whole white alabastrum(tetraploid) 12.893
CNS0095608Whole white alabastrum(tetraploid) 23.103
CNS0095609Whole white alabastrum(tetraploid) 318.250
CNS0095610Silvery flower (tetraploid) 123.174
CNS0095611Silvery flower (tetraploid) 230.538
CNS0095612Silvery flower (tetraploid) 338.876
CNS0095613Golden flower (tetraploid) 18.610
CNS0095614Golden flower (tetraploid) 216.798
CNS0095615Golden flower (tetraploid) 349.426
CRA001975CRR073297Stem 125.038
CRR073298Stem 219.813
CRR073299Stem 319.166
CRR073300Leaf 141.698
CRR073301Leaf 236.993
CRR073302Leaf 325.750
CRR073303Juvenile bud 126.809
CRR073304Juvenile bud 234.058
CRR073305Juvenile bud 348.156
CRR073306Third green 131.981
CRR073307Third green 220.582
CRR073308Third green 330.692
CRR073309Second white 126.607
CRR073310Second white 229.168
CRR073311Second white 342.374
CRR073312Silver flowering 143.262
CRR073313Silver flowering 254.357
CRR073314Silver flowering 352.887
CRR073315Gold flowering 110.090
CRR073316Gold flowering 218.529
CRR073317Gold flowering 313.153
CRR073318Tawny withering 117.880
CRR073319Tawny withering 216.907
CRR073320Tawny withering 321.253