Gene detail

Detail information of GWHGAAZE025762

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009763777.1	6.9859E-170	PREDICTED: probable acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase, mitochondrial isoform X2 [Nicotiana sylvestris]
COG	YP_001340148.1	1E-53	acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase
Swissprot	tr\|Q9SU91\|LPXA_ARATH	2E-155	Probable acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase, mitochondrial (Precursor)
trEMBL	tr\|M0ZHJ3\|M0ZHJ3_SOLTU	4E-169	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400000906}
TAIR10	AT4G29540.2	6E-105	bacterial transferase hexapeptide repeat-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	67350635	67356173	+
GWHAAZE00000007	mRNA	67350635	67356173	+
GWHAAZE00000007	exon	67350635	67350773	+
GWHAAZE00000007	exon	67351821	67351851	+
GWHAAZE00000007	exon	67351931	67352029	+
GWHAAZE00000007	exon	67352127	67352235	+
GWHAAZE00000007	exon	67352535	67352627	+
GWHAAZE00000007	exon	67352735	67352851	+
GWHAAZE00000007	exon	67353843	67353926	+
GWHAAZE00000007	exon	67354253	67354357	+
GWHAAZE00000007	exon	67354857	67354943	+
GWHAAZE00000007	exon	67355030	67355161	+
GWHAAZE00000007	exon	67355854	67356173	+
GWHAAZE00000007	CDS	67350635	67350773	+
GWHAAZE00000007	CDS	67351821	67351851	+
GWHAAZE00000007	CDS	67351931	67352029	+
GWHAAZE00000007	CDS	67352127	67352235	+
GWHAAZE00000007	CDS	67352535	67352627	+
GWHAAZE00000007	CDS	67352735	67352851	+
GWHAAZE00000007	CDS	67353843	67353926	+
GWHAAZE00000007	CDS	67354253	67354357	+
GWHAAZE00000007	CDS	67354857	67354943	+
GWHAAZE00000007	CDS	67355030	67355149	+
GWHAAZE00000007	three_prime_UTR	67355150	67355161	+
GWHAAZE00000007	three_prime_UTR	67355854	67356173	+

Transcript Sequence
>GWHTAAZE025796 ATGCCCGGGAAGCCCACAATTGTGACAGATCGCAACGTTAGGGCATTCTCTAACATAATGACCTGGCCTTTTGCAGTTCTTGCAAATATTACTCTGGCTGAAACCCCGACGCGTATCCCCCCTTCTGTACGGTGTGTCGACCTTTTGCTTGCTTGGGTTAATGCTGCTAGTGTTGGTCCTTCTGCAAAGTTGGGTAATGCTTGTCAACTATATCCCGGTAGCCATGTTTTGGGAAATACAGACTTGGGGGATAACTGCGTTTTAATGATTGGTGCTGTTGTTGGAGACGATCTTCCTGGGCATACAGTAATTGGATGCAATAATGTTGTAGGTCATCATGCTGTAGTTGGTATTAAATGTCAAGACTTGAAATACAAGCCAGGAAATGAGTGCTTCCTTGAAGTTGGCGACAACAATGAGATTAGAGAACATACCTCTATCCATCGATCATCAAAGCCAAGTGACAGAACAGTTATTGGAGATAACAATCTTATAATGGGGTCTTGTCATATAGCCCATGACTGCAAAGTGGGCAACAACAACATTTTCGCGAATAATACTCTTCTAGCAGGCCATGTTGTGGTCGAGGACTACACCCACACTGCTGGGGCCATTGTTGTTCATCAATTTTGCCGCATTGGTTCTTTCTCTTTCATTGGTGGGGGTTCTGTGGTCGCACAAGATGTCCCAAAGTACACCATGGTTGCAGGAGAGAGAGCTGAGCTACGTGGTTTAAATTTAGAAGGTCTTCGCCGGCGTGGATTCTCAGCTACTGAGATCAAGAGCCTCAGAGCAGCTTATAGAAAGATATTCATGCCCACTGACATAAATTCTGGGGGTATTGAAGATCGTCTTGCTGAATTGGAGCAACATGAAGACCTGGCTCATATACCTGCTGTGTATTCCATGGTGCAATCCATTCGCAATTCTTTGACAGAAGATCGCCGTGGAATTTGCAGGTTCAGATCTTGGAGTGGTTCATAACTATGTGTTACAATTTCTGAACCCTACAATTCTTTTGAGCTTTGCGTTGACGCGCAAGGTATTATCACCTCTTCGGGAAGCTTTTGTGTGAATGTGAATATAATTTTGTAGCTATTTTATGAATATGTTGATTGAATAGGCACTTCATATTGTTTTAGGCCTATTGATATTGTCTATGTACATATCAATTGCAGCTTCTACTTTATTCCTATTTGTTCAGTGACCATTTTGTCTTTTCCAGTCAGATTTTGATTTTCCTTCATTTTGTTTACCATTAAGATTGGGATGTTAAATTATCTAACCCTAACAAAGTTAATTTCACTTCGAATTCA

Network for GWHGAAZE025762

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00132.25	Hexapep	61	94	0.00038
PF00132.25	Hexapep	157	190	2.40E-08
PF13720.7	Acetyltransf_11	228	319	9.10E-23

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00677	lpxA	Metabolic pathways	map01100
K00677	lpxA	Lipopolysaccharide biosynthesis	map00540

Gene Ontology

GO term	Ontology	Name
GO:0008610	biological_process	lipid biosynthetic process
GO:0008780	molecular_function	acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	9.343
	SRR3591706	second leaf	4.852
	SRR3591707	mature leaf	7.796
	SRR3591708	Shoot apex	10.498
	SRR3591709	Stem	9.921
	SRR3591710	White floral bud	6.199
	SRR3591711	White flower	7.374
	SRR3591712	Green floral bud	6.896
	SRR3591713	Yellow flower	9.864
SRP173429	SRR8316895	Juvenile bud stage	6.516
	SRR8316896	Juvenile bud stage	7.497
	SRR8316897	Juvenile bud stage	3.833
	SRR8316894	Third green stage	4.523
	SRR8316900	Third green stage	9.575
	SRR8316901	Third green stage	9.761
	SRR8316898	Complete white stage	3.465
	SRR8316899	Complete white stage	18.280
	SRR8316903	Complete white stage	6.396
	SRR8316902	Silver flowering stage	3.853
	SRR8316904	Silver flowering stage	4.513
	SRR8316905	Silver flowering stage	2.502
	SRR8316906	Gold flowering stage	7.451
	SRR8316907	Gold flowering stage	5.719
	SRR8316908	Gold flowering stage	6.913
SRP132670	SRR6706286	Control	4.701
	SRR6706287	Light intensity 50%	5.823
	SRR6706288	Light intensity 20%	7.698
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.741
	CNS0095593	Slightly white alabastrum(diploid) 2	12.597
	CNS0095594	Slightly white alabastrum(diploid) 3	8.128
	CNS0095595	Whole white alabastrum(diploid) 2	9.345
	CNS0095596	Whole white alabastrum(diploid) 3	8.797
	CNS0095597	Whole white alabastrum(diploid) 4	9.706
	CNS0095598	Silvery flower (diploied) 1	7.670
	CNS0095599	Silvery flower (diploied) 2	10.217
	CNS0095600	Silvery flower (diploied) 3	5.810
	CNS0095601	Golden flower (diploid) 1	5.995
	CNS0095602	Golden flower (diploid) 2	4.539
	CNS0095603	Golden flower (diploid) 3	4.843
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.155
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.801
	CNS0095606	Slightly white alabastrum(tetraploid) 3	16.556
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.845
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.296
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.082
	CNS0095610	Silvery flower (tetraploid) 1	7.862
	CNS0095611	Silvery flower (tetraploid) 2	5.872
	CNS0095612	Silvery flower (tetraploid) 3	5.830
	CNS0095613	Golden flower (tetraploid) 1	3.734
	CNS0095614	Golden flower (tetraploid) 2	6.496
	CNS0095615	Golden flower (tetraploid) 3	3.589
CRA001975	CRR073297	Stem 1	6.720
	CRR073298	Stem 2	6.679
	CRR073299	Stem 3	5.767
	CRR073300	Leaf 1	7.548
	CRR073301	Leaf 2	8.207
	CRR073302	Leaf 3	6.251
	CRR073303	Juvenile bud 1	4.476
	CRR073304	Juvenile bud 2	1.555
	CRR073305	Juvenile bud 3	5.217
	CRR073306	Third green 1	1.299
	CRR073307	Third green 2	2.737
	CRR073308	Third green 3	1.321
	CRR073309	Second white 1	1.655
	CRR073310	Second white 2	1.689
	CRR073311	Second white 3	1.301
	CRR073312	Silver flowering 1	1.028
	CRR073313	Silver flowering 2	0.627
	CRR073314	Silver flowering 3	1.037
	CRR073315	Gold flowering 1	6.943
	CRR073316	Gold flowering 2	8.172
	CRR073317	Gold flowering 3	5.750
	CRR073318	Tawny withering 1	3.339
	CRR073319	Tawny withering 2	3.338
	CRR073320	Tawny withering 3	3.027